miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 1485 0.66 0.457694
Target:  5'- cGGcGGGCgGCGGcGGaGCG-CCgGCCGg- -3'
miRNA:   3'- -CC-CCCG-CGCCuCC-CGCaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 100872 0.66 0.457694
Target:  5'- cGGGGGaggcgGgGGAGGGCGccgcggCCC-CCGa- -3'
miRNA:   3'- -CCCCCg----CgCCUCCCGCa-----GGGcGGCag -5'
21731 3' -67 NC_004812.1 + 7242 0.66 0.457694
Target:  5'- aGGGGucaCGUGaccGGcGGCGUCCC-CCGUCg -3'
miRNA:   3'- -CCCCc--GCGCc--UC-CCGCAGGGcGGCAG- -5'
21731 3' -67 NC_004812.1 + 109420 0.66 0.457694
Target:  5'- cGGGuGGCcCGGcGGGCccccgaggCCCGCCGa- -3'
miRNA:   3'- -CCC-CCGcGCCuCCCGca------GGGCGGCag -5'
21731 3' -67 NC_004812.1 + 59265 0.66 0.457694
Target:  5'- cGGcGGuGCGCGGGaucagggucgcGGGCGcgcggcacccgCCCGCCG-Cg -3'
miRNA:   3'- -CC-CC-CGCGCCU-----------CCCGCa----------GGGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 155574 0.66 0.457694
Target:  5'- aGGGGCGCGcGcGGGCGgCCgGgCCcUCg -3'
miRNA:   3'- cCCCCGCGC-CuCCCGCaGGgC-GGcAG- -5'
21731 3' -67 NC_004812.1 + 132750 0.66 0.457694
Target:  5'- aGGGGucaCGUGaccGGcGGCGUCCC-CCGUCg -3'
miRNA:   3'- -CCCCc--GCGCc--UC-CCGCAGGGcGGCAG- -5'
21731 3' -67 NC_004812.1 + 58784 0.66 0.457694
Target:  5'- -aGGGCGCGGuGGGCuUUCCGggccCCGg- -3'
miRNA:   3'- ccCCCGCGCCuCCCGcAGGGC----GGCag -5'
21731 3' -67 NC_004812.1 + 64157 0.66 0.457694
Target:  5'- cGGcGGCGCGGcGGGC-UCCgCGCgGg- -3'
miRNA:   3'- cCC-CCGCGCCuCCCGcAGG-GCGgCag -5'
21731 3' -67 NC_004812.1 + 147744 0.66 0.457694
Target:  5'- cGGGGUccGCGGgacgcGGGGC-UCCCGCgGg- -3'
miRNA:   3'- cCCCCG--CGCC-----UCCCGcAGGGCGgCag -5'
21731 3' -67 NC_004812.1 + 126993 0.66 0.457694
Target:  5'- cGGcGGGCgGCGGcGGaGCG-CCgGCCGg- -3'
miRNA:   3'- -CC-CCCG-CGCCuCC-CGCaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 72567 0.66 0.457694
Target:  5'- gGGGGGCGcCGGuguaccGGCGccCCCGgaaaCGUCu -3'
miRNA:   3'- -CCCCCGC-GCCuc----CCGCa-GGGCg---GCAG- -5'
21731 3' -67 NC_004812.1 + 105641 0.66 0.45261
Target:  5'- aGGGaGGcCGCGGAGgcuGGCGUCCagaggggacgggcgGCCG-Cg -3'
miRNA:   3'- -CCC-CC-GCGCCUC---CCGCAGGg-------------CGGCaG- -5'
21731 3' -67 NC_004812.1 + 145291 0.66 0.449238
Target:  5'- gGGGGuGUGCGGuGuGGCGggCCCgguggGCCGa- -3'
miRNA:   3'- -CCCC-CGCGCCuC-CCGCa-GGG-----CGGCag -5'
21731 3' -67 NC_004812.1 + 3583 0.66 0.449238
Target:  5'- cGGcGGCgGCGGcGGGCGggCgCGCCGg- -3'
miRNA:   3'- cCC-CCG-CGCCuCCCGCa-GgGCGGCag -5'
21731 3' -67 NC_004812.1 + 117676 0.66 0.449238
Target:  5'- gGGGGGUgccgGCGGAGGcCGgCCCGCg--- -3'
miRNA:   3'- -CCCCCG----CGCCUCCcGCaGGGCGgcag -5'
21731 3' -67 NC_004812.1 + 94889 0.66 0.449238
Target:  5'- cGGGGucaCGUGaccGGcGGCGUCCC-CCGUCg -3'
miRNA:   3'- -CCCCc--GCGCc--UC-CCGCAGGGcGGCAG- -5'
21731 3' -67 NC_004812.1 + 148577 0.66 0.449238
Target:  5'- gGGGGGUgccgGCGGAGGcCGgCCCGCg--- -3'
miRNA:   3'- -CCCCCG----CGCCUCCcGCaGGGCGgcag -5'
21731 3' -67 NC_004812.1 + 59652 0.66 0.449238
Target:  5'- aGGGuGGUGUGGGcgcaGGCGUgCCG-CGUCu -3'
miRNA:   3'- -CCC-CCGCGCCUc---CCGCAgGGCgGCAG- -5'
21731 3' -67 NC_004812.1 + 129091 0.66 0.449238
Target:  5'- cGGcGGCgGCGGcGGGCGggCgCGCCGg- -3'
miRNA:   3'- cCC-CCG-CGCCuCCCGCa-GgGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.