miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 5' -54.3 NC_004812.1 + 39406 0.67 0.928898
Target:  5'- cUGGCGGUgcgugccgacgcGGGUCC-CGUCgagcgCCuCGCc -3'
miRNA:   3'- aACCGCCA------------UCUAGGaGUAGa----GGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 135078 0.67 0.928898
Target:  5'- -gGGCGGgggcgcgcucGGAgCC-CGUCUUCACGCc -3'
miRNA:   3'- aaCCGCCa---------UCUaGGaGUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 114328 0.67 0.923452
Target:  5'- -cGGCGG-AGAaCCU-GUUUCUGCGCg -3'
miRNA:   3'- aaCCGCCaUCUaGGAgUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 75158 0.67 0.922333
Target:  5'- gUUGGCGaGgcucucggCCUCG-CUCCGCGCc -3'
miRNA:   3'- -AACCGC-Caucua---GGAGUaGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 120892 0.67 0.917759
Target:  5'- -gGGCGGagacgcggGGGUCg-CGUCUCC-CGCa -3'
miRNA:   3'- aaCCGCCa-------UCUAGgaGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 118862 0.67 0.917759
Target:  5'- cUGGUGGUGGA-CUUCAcgCUCC-CGg -3'
miRNA:   3'- aACCGCCAUCUaGGAGUa-GAGGuGCg -5'
21731 5' -54.3 NC_004812.1 + 108079 0.67 0.905633
Target:  5'- -cGGCGGUGcGGUCCUgGaUCgugcgauaCCACGUa -3'
miRNA:   3'- aaCCGCCAU-CUAGGAgU-AGa-------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 63748 0.67 0.905633
Target:  5'- -cGGCGcuucuccggAGAUCgUCAggUCCACGCg -3'
miRNA:   3'- aaCCGCca-------UCUAGgAGUagAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 93373 0.67 0.905633
Target:  5'- gUUGGCGGccacgGGAaaggccgCCUCGUCcUCCcCGCc -3'
miRNA:   3'- -AACCGCCa----UCUa------GGAGUAG-AGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 106732 0.67 0.899205
Target:  5'- -cGGCGGcGGggCC-CAUCgUCCGgGCg -3'
miRNA:   3'- aaCCGCCaUCuaGGaGUAG-AGGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 131123 0.67 0.899205
Target:  5'- aUGGUGGgcgcgucucUGGAcaUCCUCGUgUgcCCGCGCg -3'
miRNA:   3'- aACCGCC---------AUCU--AGGAGUAgA--GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 135567 0.67 0.899205
Target:  5'- -cGGCGG-AGAUCgUCGcgCUCaUGCGCg -3'
miRNA:   3'- aaCCGCCaUCUAGgAGUa-GAG-GUGCG- -5'
21731 5' -54.3 NC_004812.1 + 67072 0.68 0.885632
Target:  5'- -aGGCcGUGGAcguccUCCUCGUCgCC-CGCa -3'
miRNA:   3'- aaCCGcCAUCU-----AGGAGUAGaGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 153652 0.68 0.883515
Target:  5'- -cGGCGcUGGGcgcgcagggcgugcUCCUgcUCUCCACGCg -3'
miRNA:   3'- aaCCGCcAUCU--------------AGGAguAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 28143 0.68 0.883515
Target:  5'- -cGGCGcUGGGcgcgcagggcgugcUCCUgcUCUCCACGCg -3'
miRNA:   3'- aaCCGCcAUCU--------------AGGAguAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 124917 0.68 0.878495
Target:  5'- -cGGCGGcgGGGgcggcggCC-CAUCUCC-CGCg -3'
miRNA:   3'- aaCCGCCa-UCUa------GGaGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 155818 0.68 0.878495
Target:  5'- -cGGCGGcgGGGgcggcggCC-CAUCUCC-CGCg -3'
miRNA:   3'- aaCCGCCa-UCUa------GGaGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 55695 0.68 0.871131
Target:  5'- gUGGCGGUGGGcgcgcgCCUgCAcccgcgCUCgGCGCa -3'
miRNA:   3'- aACCGCCAUCUa-----GGA-GUa-----GAGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 80936 0.68 0.863545
Target:  5'- -gGGCGGggGGccGUCCUCG--UCCACGUc -3'
miRNA:   3'- aaCCGCCa-UC--UAGGAGUagAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 100647 0.68 0.861226
Target:  5'- cUGGCGGcgcUGGAcauggucgacgcgcUCCUCGUCgggggCCAgGCc -3'
miRNA:   3'- aACCGCC---AUCU--------------AGGAGUAGa----GGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.