miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 5' -52.1 NC_004812.1 + 149380 1.09 0.007489
Target:  5'- uCACGUGACCCCUAUGAUCACGUGACGa -3'
miRNA:   3'- -GUGCACUGGGGAUACUAGUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 23872 1.09 0.007489
Target:  5'- uCACGUGACCCCUAUGAUCACGUGACGa -3'
miRNA:   3'- -GUGCACUGGGGAUACUAGUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 61733 1.01 0.026449
Target:  5'- uCACGUGACCCCgAUGAUCACGUGACGa -3'
miRNA:   3'- -GUGCACUGGGGaUACUAGUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 94877 0.73 0.791345
Target:  5'- uCACGUGAUCaUCgg-GGUCACGUGACc -3'
miRNA:   3'- -GUGCACUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 132738 0.73 0.809513
Target:  5'- uCACGUGAUCauaggGGUCACGUGACc -3'
miRNA:   3'- -GUGCACUGGggauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 7230 0.73 0.809513
Target:  5'- uCACGUGAUCauaggGGUCACGUGACc -3'
miRNA:   3'- -GUGCACUGGggauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 7411 0.71 0.895916
Target:  5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaGGCGa -3'
miRNA:   3'- -GUGCACUGGGgaUACUAGuGCA--------CUGC- -5'
21732 5' -52.1 NC_004812.1 + 132919 0.71 0.895916
Target:  5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaGGCGa -3'
miRNA:   3'- -GUGCACUGGGgaUACUAGuGCA--------CUGC- -5'
21732 5' -52.1 NC_004812.1 + 83233 0.71 0.895916
Target:  5'- --gGUGGCCCCcggGcgCugGUGGCGg -3'
miRNA:   3'- gugCACUGGGGauaCuaGugCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 121520 0.69 0.936539
Target:  5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3'
miRNA:   3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 152421 0.69 0.936539
Target:  5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3'
miRNA:   3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 115072 0.69 0.950274
Target:  5'- gACGagaagcagGACCCCcagGAUCACGUGgGCGu -3'
miRNA:   3'- gUGCa-------CUGGGGauaCUAGUGCAC-UGC- -5'
21732 5' -52.1 NC_004812.1 + 118450 0.69 0.950274
Target:  5'- cCGCG-GGCCCCggcgcgGUGcaggcCACGUGGCGc -3'
miRNA:   3'- -GUGCaCUGGGGa-----UACua---GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 111695 0.68 0.961868
Target:  5'- gACGUGGCCgCUGgcGAUCugGgccacgGGCGa -3'
miRNA:   3'- gUGCACUGGgGAUa-CUAGugCa-----CUGC- -5'
21732 5' -52.1 NC_004812.1 + 23694 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 149202 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 61555 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 95058 0.68 0.967529
Target:  5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaggcaacGACa -3'
miRNA:   3'- -GUGCACUGGGgaUACUAGuGCA--------------CUGc -5'
21732 5' -52.1 NC_004812.1 + 125973 0.67 0.971437
Target:  5'- uGCGUGACggCCCUGacgggggcgcUGuGUCAgGUGGCGg -3'
miRNA:   3'- gUGCACUG--GGGAU----------AC-UAGUgCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 42764 0.67 0.976523
Target:  5'- gGCGUGACCUCUuUGGUgCugGccgugggUGACGu -3'
miRNA:   3'- gUGCACUGGGGAuACUA-GugC-------ACUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.