Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 7411 | 0.71 | 0.895916 |
|
Target: 5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaGGCGa -3' miRNA: 3'- -GUGCACUGGGgaUACUAGuGCA--------CUGC- -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 83233 | 0.71 | 0.895916 |
|
Target: 5'- --gGUGGCCCCcggGcgCugGUGGCGg -3' miRNA: 3'- gugCACUGGGGauaCuaGugCACUGC- -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 132919 | 0.71 | 0.895916 |
|
Target: 5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaGGCGa -3' miRNA: 3'- -GUGCACUGGGgaUACUAGuGCA--------CUGC- -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 7230 | 0.73 | 0.809513 |
|
Target: 5'- uCACGUGAUCauaggGGUCACGUGACc -3' miRNA: 3'- -GUGCACUGGggauaCUAGUGCACUGc -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 132738 | 0.73 | 0.809513 |
|
Target: 5'- uCACGUGAUCauaggGGUCACGUGACc -3' miRNA: 3'- -GUGCACUGGggauaCUAGUGCACUGc -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 94877 | 0.73 | 0.791345 |
|
Target: 5'- uCACGUGAUCaUCgg-GGUCACGUGACc -3' miRNA: 3'- -GUGCACUGG-GGauaCUAGUGCACUGc -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 61733 | 1.01 | 0.026449 |
|
Target: 5'- uCACGUGACCCCgAUGAUCACGUGACGa -3' miRNA: 3'- -GUGCACUGGGGaUACUAGUGCACUGC- -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 23872 | 1.09 | 0.007489 |
|
Target: 5'- uCACGUGACCCCUAUGAUCACGUGACGa -3' miRNA: 3'- -GUGCACUGGGGAUACUAGUGCACUGC- -5' |
|||||||
| 21732 | 5' | -52.1 | NC_004812.1 | + | 149380 | 1.09 | 0.007489 |
|
Target: 5'- uCACGUGACCCCUAUGAUCACGUGACGa -3' miRNA: 3'- -GUGCACUGGGGAUACUAGUGCACUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home