miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21733 5' -51.3 NC_004813.1 + 27553 0.69 0.744203
Target:  5'- cUgAGUgCGUUCUGGaCCCGGgaggaGGCu -3'
miRNA:   3'- aAgUCAaGCAAGACCaGGGCCaa---UCG- -5'
21733 5' -51.3 NC_004813.1 + 12951 0.67 0.877455
Target:  5'- -gCAGUUUGUUgcaUGGUgCCGGgagaAGCa -3'
miRNA:   3'- aaGUCAAGCAAg--ACCAgGGCCaa--UCG- -5'
21733 5' -51.3 NC_004813.1 + 39231 0.66 0.892772
Target:  5'- aUCAGUaUGUUCUGGcgaaCCCGGgcUGGa -3'
miRNA:   3'- aAGUCAaGCAAGACCa---GGGCCa-AUCg -5'
21733 5' -51.3 NC_004813.1 + 48798 0.66 0.913634
Target:  5'- -aCAGgugCGg-CUGG-CCCGGUgggGGCa -3'
miRNA:   3'- aaGUCaa-GCaaGACCaGGGCCAa--UCG- -5'
21733 5' -51.3 NC_004813.1 + 12888 1.09 0.00245
Target:  5'- aUUCAGUUCGUUCUGGUCCCGGUUAGCc -3'
miRNA:   3'- -AAGUCAAGCAAGACCAGGGCCAAUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.