miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21735 5' -62.1 NC_004813.1 + 14539 0.72 0.134584
Target:  5'- uGgUGCCCAUGCCCCCCuG-GCUUcacaGAGg -3'
miRNA:   3'- -CgGCGGGUACGGGGGGuCgCGAG----UUC- -5'
21735 5' -62.1 NC_004813.1 + 18490 1.1 0.00019
Target:  5'- uGCCGCCCAUGCCCCCCAGCGCUCAAGa -3'
miRNA:   3'- -CGGCGGGUACGGGGGGUCGCGAGUUC- -5'
21735 5' -62.1 NC_004813.1 + 22281 0.66 0.34182
Target:  5'- -gCGCCCGUcaucGCCUUCCGGUGCagAAGc -3'
miRNA:   3'- cgGCGGGUA----CGGGGGGUCGCGagUUC- -5'
21735 5' -62.1 NC_004813.1 + 30221 0.66 0.374493
Target:  5'- gGCCGCCCAgGCCUcaUCCAGC-CUg--- -3'
miRNA:   3'- -CGGCGGGUaCGGG--GGGUCGcGAguuc -5'
21735 5' -62.1 NC_004813.1 + 35371 0.66 0.391605
Target:  5'- gGCUGCCCGUGCCggaugcgaCCGGCGggCGu- -3'
miRNA:   3'- -CGGCGGGUACGGgg------GGUCGCgaGUuc -5'
21735 5' -62.1 NC_004813.1 + 43861 0.7 0.20984
Target:  5'- uCUGCUCcUGCUCCCCGGCGCgcCAGa -3'
miRNA:   3'- cGGCGGGuACGGGGGGUCGCGa-GUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.