Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21736 | 3' | -57.3 | NC_004813.1 | + | 38869 | 0.66 | 0.584572 |
Target: 5'- --aCGGCCUgcugagcacGGUacacgGCUGCCcuuGCCCGCg -3' miRNA: 3'- caaGCCGGA---------CCA-----CGGUGGuu-UGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 20736 | 0.66 | 0.584572 |
Target: 5'- ---gGGUUUGGUGgCACCAGGCCg-- -3' miRNA: 3'- caagCCGGACCACgGUGGUUUGGgcg -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 48740 | 0.67 | 0.573817 |
Target: 5'- uUUCGGCCccugcGGacCUGCCGGACCUGUa -3' miRNA: 3'- cAAGCCGGa----CCacGGUGGUUUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 30151 | 0.67 | 0.552455 |
Target: 5'- ---aGGCCUGGgcgGCCAUUAAGaCCGg -3' miRNA: 3'- caagCCGGACCa--CGGUGGUUUgGGCg -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 35916 | 0.67 | 0.549271 |
Target: 5'- --aUGGCCcGGUucauccgagcaaucGCCACCuGugCCGCc -3' miRNA: 3'- caaGCCGGaCCA--------------CGGUGGuUugGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 50770 | 0.67 | 0.541863 |
Target: 5'- -aUCGGCCaGGUGCU----GACUCGCc -3' miRNA: 3'- caAGCCGGaCCACGGugguUUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 57017 | 0.67 | 0.531339 |
Target: 5'- -aUCGGCCaGGUGCUgacucGCCGAuaaCUGUg -3' miRNA: 3'- caAGCCGGaCCACGG-----UGGUUug-GGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 12884 | 0.67 | 0.52089 |
Target: 5'- aGUUCGuuCUGGUcCCgguuaGCCAGACUCGCc -3' miRNA: 3'- -CAAGCcgGACCAcGG-----UGGUUUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 29626 | 0.67 | 0.52089 |
Target: 5'- --aUGGCCUGGUGCguugGCaauGCCCGg -3' miRNA: 3'- caaGCCGGACCACGg---UGguuUGGGCg -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 30857 | 0.68 | 0.479962 |
Target: 5'- -aUCGGCagUGGgcgcgggGaCCACCAcgGAUCCGCa -3' miRNA: 3'- caAGCCGg-ACCa------C-GGUGGU--UUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 38332 | 0.69 | 0.440669 |
Target: 5'- ---aGcGCCUgacugaacugGGUGaUCACCGAGCCCGCc -3' miRNA: 3'- caagC-CGGA----------CCAC-GGUGGUUUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 49720 | 0.69 | 0.440669 |
Target: 5'- cGUUCaGCgCUGGUGagcCCACCAucaCCGCc -3' miRNA: 3'- -CAAGcCG-GACCAC---GGUGGUuugGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 16252 | 0.69 | 0.431133 |
Target: 5'- gGUUUGGCCUGGUGauaGC---GCCUGCc -3' miRNA: 3'- -CAAGCCGGACCACgg-UGguuUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 21248 | 0.71 | 0.334799 |
Target: 5'- --gUGGCUgucaGUGCCACCAgcGACCCGg -3' miRNA: 3'- caaGCCGGac--CACGGUGGU--UUGGGCg -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 48848 | 0.71 | 0.326862 |
Target: 5'- uUUCGGUCccugUGG-GCCuGCCGGGCCUGCc -3' miRNA: 3'- cAAGCCGG----ACCaCGG-UGGUUUGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 44391 | 0.82 | 0.06308 |
Target: 5'- --cCGGCCUGGUGCCugUGGgacaugcugacccACCCGCg -3' miRNA: 3'- caaGCCGGACCACGGugGUU-------------UGGGCG- -5' |
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21736 | 3' | -57.3 | NC_004813.1 | + | 20817 | 1.12 | 0.000395 |
Target: 5'- aGUUCGGCCUGGUGCCACCAAACCCGCg -3' miRNA: 3'- -CAAGCCGGACCACGGUGGUUUGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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