miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21737 5' -58.1 NC_004813.1 + 35973 0.69 0.388127
Target:  5'- -gCGCUUCcGUgGGUGGUUUUcaGCCUGa -3'
miRNA:   3'- ggGCGAAGuCAgCCACCGAGA--CGGAC- -5'
21737 5' -58.1 NC_004813.1 + 26052 0.69 0.388127
Target:  5'- aCCUGCaugUCAGUaaUGGUGGCaUUcGCCUGu -3'
miRNA:   3'- -GGGCGa--AGUCA--GCCACCG-AGaCGGAC- -5'
21737 5' -58.1 NC_004813.1 + 21878 0.7 0.345793
Target:  5'- aUgGCaggUCAgugcGUCGGUGGCUCUGCUg- -3'
miRNA:   3'- gGgCGa--AGU----CAGCCACCGAGACGGac -5'
21737 5' -58.1 NC_004813.1 + 32085 0.76 0.137472
Target:  5'- gCCUGUUUCAGgCGGUGGCUgaGCCc- -3'
miRNA:   3'- -GGGCGAAGUCaGCCACCGAgaCGGac -5'
21737 5' -58.1 NC_004813.1 + 23580 1.09 0.000567
Target:  5'- uCCCGCUUCAGUCGGUGGCUCUGCCUGu -3'
miRNA:   3'- -GGGCGAAGUCAGCCACCGAGACGGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.