miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21738 5' -53 NC_004813.1 + 53324 0.66 0.860662
Target:  5'- uGUugauGCCAGUaAUCCgGcUUCCUuaaGCCGCu -3'
miRNA:   3'- uCAu---UGGUCA-UAGGgC-AGGGA---UGGCG- -5'
21738 5' -53 NC_004813.1 + 50497 0.66 0.852265
Target:  5'- cAGUAcucccuguugauGCCAGUaAUCCgGcUUCCUuaaGCCGCu -3'
miRNA:   3'- -UCAU------------UGGUCA-UAGGgC-AGGGA---UGGCG- -5'
21738 5' -53 NC_004813.1 + 46995 0.66 0.834776
Target:  5'- gGGUGACaugac-CCCG-CCCUGCCGg -3'
miRNA:   3'- -UCAUUGgucauaGGGCaGGGAUGGCg -5'
21738 5' -53 NC_004813.1 + 37954 0.67 0.796307
Target:  5'- --cAGCCAGag-CCCGgcgcugcUCCCUggcuGCCGCa -3'
miRNA:   3'- ucaUUGGUCauaGGGC-------AGGGA----UGGCG- -5'
21738 5' -53 NC_004813.1 + 28565 0.67 0.795329
Target:  5'- cAGUcggGGCCAGaaugguguagCCCGcCgCCUGCCGCc -3'
miRNA:   3'- -UCA---UUGGUCaua-------GGGCaG-GGAUGGCG- -5'
21738 5' -53 NC_004813.1 + 57438 0.67 0.777443
Target:  5'- -cUGACUAaaAUCCCGUCCacaUGCCGg -3'
miRNA:   3'- ucAUUGGUcaUAGGGCAGGg--AUGGCg -5'
21738 5' -53 NC_004813.1 + 44439 0.69 0.703806
Target:  5'- uGUAuGCCGGUuucaggcUgCCGUCCCagaUACCGCu -3'
miRNA:   3'- uCAU-UGGUCAu------AgGGCAGGG---AUGGCG- -5'
21738 5' -53 NC_004813.1 + 39653 0.69 0.670948
Target:  5'- gAGUGGCCuguggcagccGUAacggcacauUCaCCaGUCCCUGCCGCu -3'
miRNA:   3'- -UCAUUGGu---------CAU---------AG-GG-CAGGGAUGGCG- -5'
21738 5' -53 NC_004813.1 + 38316 0.7 0.648839
Target:  5'- gGGUGAUCAccgagCCCGcCUCUGCCGUa -3'
miRNA:   3'- -UCAUUGGUcaua-GGGCaGGGAUGGCG- -5'
21738 5' -53 NC_004813.1 + 23821 1.12 0.001222
Target:  5'- cAGUAACCAGUAUCCCGUCCCUACCGCu -3'
miRNA:   3'- -UCAUUGGUCAUAGGGCAGGGAUGGCG- -5'
21738 5' -53 NC_004813.1 + 45044 0.73 0.455715
Target:  5'- -aUGACCGgcggacGUGUCCUGUCCaucgaUGCCGCc -3'
miRNA:   3'- ucAUUGGU------CAUAGGGCAGGg----AUGGCG- -5'
21738 5' -53 NC_004813.1 + 34540 0.72 0.496529
Target:  5'- cAGUGGCCAGUGUa-CGgaaaaaacauuuUCCCUGCCGg -3'
miRNA:   3'- -UCAUUGGUCAUAggGC------------AGGGAUGGCg -5'
21738 5' -53 NC_004813.1 + 29734 0.67 0.787445
Target:  5'- --aAugCGGUAUCCCugauGUCCCUGaauCCGg -3'
miRNA:   3'- ucaUugGUCAUAGGG----CAGGGAU---GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.