miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21740 3' -57.6 NC_004813.1 + 28352 1.12 0.000387
Target:  5'- uCGGGCUGCCCGGUGCAUCCACAAUCCg -3'
miRNA:   3'- -GCCCGACGGGCCACGUAGGUGUUAGG- -5'
21740 3' -57.6 NC_004813.1 + 32519 0.71 0.349151
Target:  5'- aCGGuGcCUGCCCGGgaaGUgAUCCACGA-CCg -3'
miRNA:   3'- -GCC-C-GACGGGCCa--CG-UAGGUGUUaGG- -5'
21740 3' -57.6 NC_004813.1 + 35437 0.69 0.400793
Target:  5'- aCGGGCaGCCCGacaaCGUUCAgGAUCCg -3'
miRNA:   3'- -GCCCGaCGGGCcac-GUAGGUgUUAGG- -5'
21740 3' -57.6 NC_004813.1 + 45252 0.69 0.419056
Target:  5'- gCGGGgUGUgCGGUGaUGUCCACAcUCa -3'
miRNA:   3'- -GCCCgACGgGCCAC-GUAGGUGUuAGg -5'
21740 3' -57.6 NC_004813.1 + 32578 0.68 0.486717
Target:  5'- aGGGUUGCcgCCGGUGUAUgCCGCcgggCUg -3'
miRNA:   3'- gCCCGACG--GGCCACGUA-GGUGuua-GG- -5'
21740 3' -57.6 NC_004813.1 + 38646 0.68 0.505973
Target:  5'- gGGGUUGCCCGGUaCuUUgGCAAuauggccUCCg -3'
miRNA:   3'- gCCCGACGGGCCAcGuAGgUGUU-------AGG- -5'
21740 3' -57.6 NC_004813.1 + 35368 0.68 0.506995
Target:  5'- uCGGGCUGCCCG-UGCcggaUGCGA-CCg -3'
miRNA:   3'- -GCCCGACGGGCcACGuag-GUGUUaGG- -5'
21740 3' -57.6 NC_004813.1 + 27534 0.67 0.526585
Target:  5'- uGGGCUGaaccauaCCCGGcugagUGCGUUCugGAcCCg -3'
miRNA:   3'- gCCCGAC-------GGGCC-----ACGUAGGugUUaGG- -5'
21740 3' -57.6 NC_004813.1 + 35855 0.67 0.538056
Target:  5'- cCGGGCgcacaaacggGUgCGGUGgcaUAUUCACGGUCCc -3'
miRNA:   3'- -GCCCGa---------CGgGCCAC---GUAGGUGUUAGG- -5'
21740 3' -57.6 NC_004813.1 + 46384 0.67 0.538056
Target:  5'- gGGGCUGgCCaucaGUAUCCuCAAUCCc -3'
miRNA:   3'- gCCCGACgGGcca-CGUAGGuGUUAGG- -5'
21740 3' -57.6 NC_004813.1 + 34944 0.67 0.569744
Target:  5'- gGGGCUGCcaugcgacugaCCGGgaUGCuguaCCGgAAUCCg -3'
miRNA:   3'- gCCCGACG-----------GGCC--ACGua--GGUgUUAGG- -5'
21740 3' -57.6 NC_004813.1 + 48698 0.67 0.569744
Target:  5'- gCGGGgaGagaCCGGUcugacgggaaauGCAggUCCACAggGUCCa -3'
miRNA:   3'- -GCCCgaCg--GGCCA------------CGU--AGGUGU--UAGG- -5'
21740 3' -57.6 NC_004813.1 + 42292 0.66 0.591125
Target:  5'- uGGuCUGCCgGgGUGaCAUUCACAAauUCCg -3'
miRNA:   3'- gCCcGACGGgC-CAC-GUAGGUGUU--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.