Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21742 | 3' | -53 | NC_004813.1 | + | 18455 | 0.66 | 0.851207 |
Target: 5'- uGGUCGcccauUGCUGCCGGAuuuaaGGGAc- -3' miRNA: 3'- -CCAGU-----ACGACGGUCUcuuugCCCUcg -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 37852 | 0.66 | 0.833572 |
Target: 5'- cGUCAgGCUGCUgcGGcAGCcaGGGAGCa -3' miRNA: 3'- cCAGUaCGACGGucUCuUUG--CCCUCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 31041 | 0.67 | 0.785861 |
Target: 5'- cGGgcgGUGCUGCCGGcuGGGugGGuGAGg -3' miRNA: 3'- -CCag-UACGACGGUCu-CUUugCC-CUCg -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 40093 | 0.67 | 0.765553 |
Target: 5'- gGGUaCggGCagggggaacgaGCCAGAGAAcgcauGCGGGAGUu -3' miRNA: 3'- -CCA-GuaCGa----------CGGUCUCUU-----UGCCCUCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 35518 | 0.68 | 0.755182 |
Target: 5'- ---gGUGCUGCguGAGGcaacccguGCGGGuGCg -3' miRNA: 3'- ccagUACGACGguCUCUu-------UGCCCuCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 46278 | 0.68 | 0.712529 |
Target: 5'- --cUAUGUUGCCGGuauuGGAGCGGGGa- -3' miRNA: 3'- ccaGUACGACGGUCu---CUUUGCCCUcg -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 13511 | 0.68 | 0.712529 |
Target: 5'- cGGUU-UGCUaCCAGGGAagAACGGGAa- -3' miRNA: 3'- -CCAGuACGAcGGUCUCU--UUGCCCUcg -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 45613 | 0.69 | 0.679645 |
Target: 5'- cGGUC-UGCcGCCGGGGGaauacacccuGACGGucaGGGCg -3' miRNA: 3'- -CCAGuACGaCGGUCUCU----------UUGCC---CUCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 43775 | 0.7 | 0.635202 |
Target: 5'- cGGUCuggcGC-GCCGG-GGAGCaGGAGCa -3' miRNA: 3'- -CCAGua--CGaCGGUCuCUUUGcCCUCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 3796 | 0.71 | 0.567537 |
Target: 5'- gGGUUGUcggacuugugcaaGUUGCCAgGAGGAGCuGGAGCu -3' miRNA: 3'- -CCAGUA-------------CGACGGU-CUCUUUGcCCUCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 35148 | 0.71 | 0.535946 |
Target: 5'- cGUaAUGCUGCCGGAGAaaugacggaagAAUGGGuGUc -3' miRNA: 3'- cCAgUACGACGGUCUCU-----------UUGCCCuCG- -5' |
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21742 | 3' | -53 | NC_004813.1 | + | 30091 | 1.15 | 0.000701 |
Target: 5'- uGGUCAUGCUGCCAGAGAAACGGGAGCg -3' miRNA: 3'- -CCAGUACGACGGUCUCUUUGCCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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