miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21743 3' -62.8 NC_004813.1 + 32092 0.66 0.360893
Target:  5'- uCAGgCGGUGGCugaGCCCuuugccGGCGCCUGg -3'
miRNA:   3'- -GUCgGCCGUCGuggCGGG------CUGUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 44563 0.66 0.350372
Target:  5'- uGGUC-GCAGUACUGCCCGAuggcauacagcgccCACUUGu -3'
miRNA:   3'- gUCGGcCGUCGUGGCGGGCU--------------GUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 33359 0.66 0.352781
Target:  5'- uCAGa-GGCAGCgACCGCCUGAgGCa-- -3'
miRNA:   3'- -GUCggCCGUCG-UGGCGGGCUgUGgac -5'
21743 3' -62.8 NC_004813.1 + 34924 0.67 0.285658
Target:  5'- aGGCCaGCAGCACggcgguaGCCUGACgaACCUu -3'
miRNA:   3'- gUCGGcCGUCGUGg------CGGGCUG--UGGAc -5'
21743 3' -62.8 NC_004813.1 + 21482 0.67 0.285658
Target:  5'- -uGCauGCuGCACCGCCCGGuguCACCg- -3'
miRNA:   3'- guCGgcCGuCGUGGCGGGCU---GUGGac -5'
21743 3' -62.8 NC_004813.1 + 27212 0.67 0.314177
Target:  5'- gCGGCgGGUGGUauGCCGgaCCCGACGCUg- -3'
miRNA:   3'- -GUCGgCCGUCG--UGGC--GGGCUGUGGac -5'
21743 3' -62.8 NC_004813.1 + 45114 0.67 0.30685
Target:  5'- -uGCCGGagacCGGUGCCGCCaCGGugaACCUGa -3'
miRNA:   3'- guCGGCC----GUCGUGGCGG-GCUg--UGGAC- -5'
21743 3' -62.8 NC_004813.1 + 33991 0.67 0.284288
Target:  5'- gCAGCCGGCGGacggcaaaagucuCACCccggaugaugugcGUCCGAUGCUUGa -3'
miRNA:   3'- -GUCGGCCGUC-------------GUGG-------------CGGGCUGUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 37867 0.67 0.272182
Target:  5'- gCAGCCaGGgAGCAgCGCCgGGC-UCUGg -3'
miRNA:   3'- -GUCGG-CCgUCGUgGCGGgCUGuGGAC- -5'
21743 3' -62.8 NC_004813.1 + 33830 0.68 0.264345
Target:  5'- aCAGCCGGCGGacgguaaaagucuCACCccggaugaugugcGUCCGAUGCUUGa -3'
miRNA:   3'- -GUCGGCCGUC-------------GUGG-------------CGGGCUGUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 33668 0.68 0.264345
Target:  5'- aCAGCCGGCGGacgguaaaagucuCACCccggaugaugugcGUCCGAUGCUUGa -3'
miRNA:   3'- -GUCGGCCGUC-------------GUGG-------------CGGGCUGUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 34153 0.68 0.239538
Target:  5'- gCAGCCGGCAGacgguaaaaguauCACCccggaugaugugcGUCCGAUGCUUGa -3'
miRNA:   3'- -GUCGGCCGUC-------------GUGG-------------CGGGCUGUGGAC- -5'
21743 3' -62.8 NC_004813.1 + 37967 0.68 0.240731
Target:  5'- uGGCUGuGCAGCucaGCCagaGCCCGGCGCUg- -3'
miRNA:   3'- gUCGGC-CGUCG---UGG---CGGGCUGUGGac -5'
21743 3' -62.8 NC_004813.1 + 27139 0.69 0.21237
Target:  5'- aCAGa-GaCAGCACUGCCCGGCAucCCUGa -3'
miRNA:   3'- -GUCggCcGUCGUGGCGGGCUGU--GGAC- -5'
21743 3' -62.8 NC_004813.1 + 30631 0.69 0.229024
Target:  5'- aAGCCGGUAagGCCGCCaCGGCGCa-- -3'
miRNA:   3'- gUCGGCCGUcgUGGCGG-GCUGUGgac -5'
21743 3' -62.8 NC_004813.1 + 21379 0.71 0.159978
Target:  5'- gCAGCUGGC-GCGCCGCaguacggUGACACCg- -3'
miRNA:   3'- -GUCGGCCGuCGUGGCGg------GCUGUGGac -5'
21743 3' -62.8 NC_004813.1 + 23573 0.72 0.14025
Target:  5'- uCAGUCGGUGGCuCUGCCUGuACACCa- -3'
miRNA:   3'- -GUCGGCCGUCGuGGCGGGC-UGUGGac -5'
21743 3' -62.8 NC_004813.1 + 39236 0.73 0.107339
Target:  5'- uCAGCCGGUucugcucugucAGCGCCGCCCGuguuCGuCCUu -3'
miRNA:   3'- -GUCGGCCG-----------UCGUGGCGGGCu---GU-GGAc -5'
21743 3' -62.8 NC_004813.1 + 31117 1.08 0.00023
Target:  5'- cCAGCCGGCAGCACCGCCCGACACCUGg -3'
miRNA:   3'- -GUCGGCCGUCGUGGCGGGCUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.