Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21743 | 5' | -50.6 | NC_004813.1 | + | 34480 | 0.66 | 0.930534 |
Target: 5'- gGCGGAUAUUGA-CGuCAgCaUGACGGg -3' miRNA: 3'- gUGCCUAUAACUuGCcGUgG-ACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 44346 | 0.66 | 0.924697 |
Target: 5'- aGCGG-UAUcugGGACGGCAgCCUGAaacCGGc -3' miRNA: 3'- gUGCCuAUAa--CUUGCCGU-GGACU---GCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 41929 | 0.66 | 0.924697 |
Target: 5'- gCGCGGGUGUgagaUGcGCGGCAUgguggcuaauuUUGGCGGu -3' miRNA: 3'- -GUGCCUAUA----ACuUGCCGUG-----------GACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 47433 | 0.66 | 0.930534 |
Target: 5'- aGCGGGUAUcgcUGuaAugGGuCAgCUGGCGAu -3' miRNA: 3'- gUGCCUAUA---AC--UugCC-GUgGACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 45503 | 0.66 | 0.935538 |
Target: 5'- cCGCGGGUggUGAaggGCGugcgcuucagucuGCGCCUGACc- -3' miRNA: 3'- -GUGCCUAuaACU---UGC-------------CGUGGACUGcu -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 45350 | 0.66 | 0.946301 |
Target: 5'- aGCGGAacagGcGACGGCGCagUGACGGc -3' miRNA: 3'- gUGCCUauaaC-UUGCCGUGg-ACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 48069 | 0.66 | 0.936079 |
Target: 5'- aCACGG-UGaUGGuccCGGCAUgUGACGGc -3' miRNA: 3'- -GUGCCuAUaACUu--GCCGUGgACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 20129 | 0.67 | 0.898451 |
Target: 5'- uCGCGaGUugccaGAAUGGCAUCUGAUGAg -3' miRNA: 3'- -GUGCcUAuaa--CUUGCCGUGGACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 32095 | 0.67 | 0.912151 |
Target: 5'- gGCGGuggcUGAGCccuuugccGGCGCCUGGCa- -3' miRNA: 3'- gUGCCuauaACUUG--------CCGUGGACUGcu -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 18688 | 0.68 | 0.8758 |
Target: 5'- aGCGGAggggauUGUUGAA-GGCAUgCUGAUGAu -3' miRNA: 3'- gUGCCU------AUAACUUgCCGUG-GACUGCU- -5' |
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21743 | 5' | -50.6 | NC_004813.1 | + | 31083 | 1.1 | 0.002821 |
Target: 5'- aCACGGAUAUUGAACGGCACCUGACGAa -3' miRNA: 3'- -GUGCCUAUAACUUGCCGUGGACUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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