miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21744 3' -56.5 NC_004813.1 + 26224 0.66 0.641643
Target:  5'- -aUCCacgccggaGGUGcCGGUGGCuUCACGCaCGg -3'
miRNA:   3'- aaAGG--------UCAC-GUCACCGuAGUGCGgGC- -5'
21744 3' -56.5 NC_004813.1 + 48753 0.66 0.597402
Target:  5'- --aCCGGUGCGGcaGGCccggCAgGCCCa -3'
miRNA:   3'- aaaGGUCACGUCa-CCGua--GUgCGGGc -5'
21744 3' -56.5 NC_004813.1 + 30669 0.66 0.623928
Target:  5'- --gCCGGUaacgggaauguggccGCGGUGGCuUCuGCGCCUGu -3'
miRNA:   3'- aaaGGUCA---------------CGUCACCGuAG-UGCGGGC- -5'
21744 3' -56.5 NC_004813.1 + 29630 0.66 0.641643
Target:  5'- --cCUGGUGCGuUGGCA--AUGCCCGg -3'
miRNA:   3'- aaaGGUCACGUcACCGUagUGCGGGC- -5'
21744 3' -56.5 NC_004813.1 + 5923 0.66 0.6195
Target:  5'- gUUCCGGUGguG-GGCGUugauggCugGuCCCGc -3'
miRNA:   3'- aAAGGUCACguCaCCGUA------GugC-GGGC- -5'
21744 3' -56.5 NC_004813.1 + 27938 0.66 0.592995
Target:  5'- --aCCAcggGCGGUGGCAUCuccggauuuguuuCGUCCGg -3'
miRNA:   3'- aaaGGUca-CGUCACCGUAGu------------GCGGGC- -5'
21744 3' -56.5 NC_004813.1 + 38219 0.67 0.532094
Target:  5'- -cUCCGGUGcCAGUacGGCAgaggCGgGCUCGg -3'
miRNA:   3'- aaAGGUCAC-GUCA--CCGUa---GUgCGGGC- -5'
21744 3' -56.5 NC_004813.1 + 44566 0.67 0.5645
Target:  5'- -gUCUGGUcGCAGUacugcccgauGGCAUacaGCGCCCa -3'
miRNA:   3'- aaAGGUCA-CGUCA----------CCGUAg--UGCGGGc -5'
21744 3' -56.5 NC_004813.1 + 22295 0.68 0.489996
Target:  5'- cUUCCGGUGCAGaagccacaGGCGUCACaacacuGCUCu -3'
miRNA:   3'- aAAGGUCACGUCa-------CCGUAGUG------CGGGc -5'
21744 3' -56.5 NC_004813.1 + 35843 0.71 0.340309
Target:  5'- --aCgGGUGCGGUGGCAuauUCACGgucCCCa -3'
miRNA:   3'- aaaGgUCACGUCACCGU---AGUGC---GGGc -5'
21744 3' -56.5 NC_004813.1 + 34410 1.06 0.001041
Target:  5'- aUUUCCAGUGCAGUGGCAUCACGCCCGu -3'
miRNA:   3'- -AAAGGUCACGUCACCGUAGUGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.