Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21744 | 5' | -61.3 | NC_004813.1 | + | 34376 | 1.08 | 0.000283 |
Target: 5'- gAGCCGGCAGGGCACUCACCGCAUCCAg -3' miRNA: 3'- -UCGGCCGUCCCGUGAGUGGCGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 33992 | 0.73 | 0.13785 |
Target: 5'- cAGCCGGCGGacGGCAaaaguCUCACCccggaugauguGCGUCCGa -3' miRNA: 3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 32177 | 0.71 | 0.193948 |
Target: 5'- cGCCGGCaaAGGGCucaGC-CACCGCcugaaacaggcugGUCCAg -3' miRNA: 3'- uCGGCCG--UCCCG---UGaGUGGCG-------------UAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 45283 | 0.7 | 0.215591 |
Target: 5'- ---aGGCAGGGUGCUgACCuGUAUCCGg -3' miRNA: 3'- ucggCCGUCCCGUGAgUGG-CGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 33831 | 0.69 | 0.232712 |
Target: 5'- cAGCCGGCGGacGGUAaaaguCUCACCccggaugauguGCGUCCGa -3' miRNA: 3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 33669 | 0.69 | 0.232712 |
Target: 5'- cAGCCGGCGGacGGUAaaaguCUCACCccggaugauguGCGUCCGa -3' miRNA: 3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 34154 | 0.69 | 0.250964 |
Target: 5'- cAGCCGGCAGacGGUAaaaguaUCACCccggaugauguGCGUCCGa -3' miRNA: 3'- -UCGGCCGUC--CCGUg-----AGUGG-----------CGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 30174 | 0.67 | 0.335835 |
Target: 5'- gGGCUGGuCAGGGgGCUguCCGUGggcuUCCGu -3' miRNA: 3'- -UCGGCC-GUCCCgUGAguGGCGU----AGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 41740 | 0.67 | 0.336624 |
Target: 5'- gGGUCGGCcuccGGauugcccgccacaaaAUUCACCGCAUCCAg -3' miRNA: 3'- -UCGGCCGuc--CCg--------------UGAGUGGCGUAGGU- -5' |
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21744 | 5' | -61.3 | NC_004813.1 | + | 21574 | 0.66 | 0.394266 |
Target: 5'- -aCCGGCGaaugcGGGCAUUCuGCUGguUCCGu -3' miRNA: 3'- ucGGCCGU-----CCCGUGAG-UGGCguAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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