miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21744 5' -61.3 NC_004813.1 + 34376 1.08 0.000283
Target:  5'- gAGCCGGCAGGGCACUCACCGCAUCCAg -3'
miRNA:   3'- -UCGGCCGUCCCGUGAGUGGCGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 33992 0.73 0.13785
Target:  5'- cAGCCGGCGGacGGCAaaaguCUCACCccggaugauguGCGUCCGa -3'
miRNA:   3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 32177 0.71 0.193948
Target:  5'- cGCCGGCaaAGGGCucaGC-CACCGCcugaaacaggcugGUCCAg -3'
miRNA:   3'- uCGGCCG--UCCCG---UGaGUGGCG-------------UAGGU- -5'
21744 5' -61.3 NC_004813.1 + 45283 0.7 0.215591
Target:  5'- ---aGGCAGGGUGCUgACCuGUAUCCGg -3'
miRNA:   3'- ucggCCGUCCCGUGAgUGG-CGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 33831 0.69 0.232712
Target:  5'- cAGCCGGCGGacGGUAaaaguCUCACCccggaugauguGCGUCCGa -3'
miRNA:   3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 33669 0.69 0.232712
Target:  5'- cAGCCGGCGGacGGUAaaaguCUCACCccggaugauguGCGUCCGa -3'
miRNA:   3'- -UCGGCCGUC--CCGU-----GAGUGG-----------CGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 34154 0.69 0.250964
Target:  5'- cAGCCGGCAGacGGUAaaaguaUCACCccggaugauguGCGUCCGa -3'
miRNA:   3'- -UCGGCCGUC--CCGUg-----AGUGG-----------CGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 30174 0.67 0.335835
Target:  5'- gGGCUGGuCAGGGgGCUguCCGUGggcuUCCGu -3'
miRNA:   3'- -UCGGCC-GUCCCgUGAguGGCGU----AGGU- -5'
21744 5' -61.3 NC_004813.1 + 41740 0.67 0.336624
Target:  5'- gGGUCGGCcuccGGauugcccgccacaaaAUUCACCGCAUCCAg -3'
miRNA:   3'- -UCGGCCGuc--CCg--------------UGAGUGGCGUAGGU- -5'
21744 5' -61.3 NC_004813.1 + 21574 0.66 0.394266
Target:  5'- -aCCGGCGaaugcGGGCAUUCuGCUGguUCCGu -3'
miRNA:   3'- ucGGCCGU-----CCCGUGAG-UGGCguAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.