miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21745 3' -61.1 NC_004813.1 + 21056 0.66 0.405593
Target:  5'- aGUCCGGaagccugaaugacaCACGGGgacuaCAGCCCGAaauACGa -3'
miRNA:   3'- -UAGGCC--------------GUGCCC-----GUCGGGCUgu-UGCa -5'
21745 3' -61.1 NC_004813.1 + 44977 0.66 0.381895
Target:  5'- -cCCGGCACGGugGGCCUGACccGACu- -3'
miRNA:   3'- uaGGCCGUGCCcgUCGGGCUG--UUGca -5'
21745 3' -61.1 NC_004813.1 + 27360 0.67 0.356669
Target:  5'- -cCCGGgGCGGGUcacAGUCCGAUGAUa- -3'
miRNA:   3'- uaGGCCgUGCCCG---UCGGGCUGUUGca -5'
21745 3' -61.1 NC_004813.1 + 40553 0.67 0.348524
Target:  5'- uGUCCGGUGCGGGaggauuuCUCGGCAGCa- -3'
miRNA:   3'- -UAGGCCGUGCCCguc----GGGCUGUUGca -5'
21745 3' -61.1 NC_004813.1 + 48753 0.67 0.356669
Target:  5'- -aCCGGUGCGGcaGGCCCGGCAGg-- -3'
miRNA:   3'- uaGGCCGUGCCcgUCGGGCUGUUgca -5'
21745 3' -61.1 NC_004813.1 + 30177 0.67 0.356669
Target:  5'- uAUCCGGCACGGGCuucGCCaguGuuGcCGUg -3'
miRNA:   3'- -UAGGCCGUGCCCGu--CGGg--CugUuGCA- -5'
21745 3' -61.1 NC_004813.1 + 28837 0.68 0.288204
Target:  5'- uUCCGG-ACGGGaggcaAGCCCGcCGAUGg -3'
miRNA:   3'- uAGGCCgUGCCCg----UCGGGCuGUUGCa -5'
21745 3' -61.1 NC_004813.1 + 28279 0.68 0.302476
Target:  5'- ----uGCAcCGGGCAGCCCGACGuuCGg -3'
miRNA:   3'- uaggcCGU-GCCCGUCGGGCUGUu-GCa -5'
21745 3' -61.1 NC_004813.1 + 45260 0.74 0.110004
Target:  5'- gGUCCGGCGCGGGguGUgCGGUGAUGUc -3'
miRNA:   3'- -UAGGCCGUGCCCguCGgGCUGUUGCA- -5'
21745 3' -61.1 NC_004813.1 + 35445 1.04 0.000601
Target:  5'- cAUCCGGCACGGGCAGCCCGACAACGUu -3'
miRNA:   3'- -UAGGCCGUGCCCGUCGGGCUGUUGCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.