miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21746 3' -57.9 NC_004813.1 + 32112 0.72 0.245774
Target:  5'- uUGCC-GGCGCcuGGCAGCaGGGCGUGa -3'
miRNA:   3'- cACGGaCUGCG--UCGUUGgCCCGUACa -5'
21746 3' -57.9 NC_004813.1 + 30152 0.68 0.419047
Target:  5'- -gGCCUGG-GCGGCcauuaaGACCGGGC-UGg -3'
miRNA:   3'- caCGGACUgCGUCG------UUGGCCCGuACa -5'
21746 3' -57.9 NC_004813.1 + 38340 0.67 0.487758
Target:  5'- cGUGCaCUGGCuGCGGguAU-GGGCGUGg -3'
miRNA:   3'- -CACG-GACUG-CGUCguUGgCCCGUACa -5'
21746 3' -57.9 NC_004813.1 + 42122 0.66 0.529322
Target:  5'- -cGCa-GGCGCA-CAccGCCGGGCAUGc -3'
miRNA:   3'- caCGgaCUGCGUcGU--UGGCCCGUACa -5'
21746 3' -57.9 NC_004813.1 + 45057 0.66 0.529322
Target:  5'- gGUGUgUGACGCAGCcccuguGACCcGaGCGUGa -3'
miRNA:   3'- -CACGgACUGCGUCG------UUGGcC-CGUACa -5'
21746 3' -57.9 NC_004813.1 + 13475 0.68 0.43809
Target:  5'- -cGCCUGuuaGCGCGGCAAcguCCGGcGCAc-- -3'
miRNA:   3'- caCGGAC---UGCGUCGUU---GGCC-CGUaca -5'
21746 3' -57.9 NC_004813.1 + 45466 0.73 0.199302
Target:  5'- gGUGCCUGACuGCGGCucaAAgCGGGCAc-- -3'
miRNA:   3'- -CACGGACUG-CGUCG---UUgGCCCGUaca -5'
21746 3' -57.9 NC_004813.1 + 37392 1.07 0.000611
Target:  5'- aGUGCCUGACGCAGCAACCGGGCAUGUa -3'
miRNA:   3'- -CACGGACUGCGUCGUUGGCCCGUACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.