Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21747 | 3' | -55.3 | NC_004813.1 | + | 28800 | 0.66 | 0.753812 |
Target: 5'- cCACCcaGUCGaaugagCCGcCAGCCGggGUGu -3' miRNA: 3'- -GUGGc-CAGUaa----GGCuGUCGGCuuCGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 36760 | 0.66 | 0.733104 |
Target: 5'- aCACCGGUUuacCCuuCAGgCGAAGUGa -3' miRNA: 3'- -GUGGCCAGuaaGGcuGUCgGCUUCGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 52488 | 0.67 | 0.701323 |
Target: 5'- cCACCGcugaacGUCAgcgUCUGAaagAGCUGGAGCGu -3' miRNA: 3'- -GUGGC------CAGUa--AGGCUg--UCGGCUUCGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 45606 | 0.67 | 0.679785 |
Target: 5'- cCACUGGUCAgg-CG-CAGaCUGAAGCGc -3' miRNA: 3'- -GUGGCCAGUaagGCuGUC-GGCUUCGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 42317 | 0.67 | 0.658069 |
Target: 5'- cCGCCGGUCAgccUCGcuCAGCCaGGGCa -3' miRNA: 3'- -GUGGCCAGUaa-GGCu-GUCGGcUUCGc -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 2707 | 0.69 | 0.560285 |
Target: 5'- -uUCGGcUCAUUCUGugGGCUGAccAGCa -3' miRNA: 3'- guGGCC-AGUAAGGCugUCGGCU--UCGc -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 45186 | 0.69 | 0.549595 |
Target: 5'- gCACCGGUC--UCCGGCAGUgucaccucaCGGuccAGCGu -3' miRNA: 3'- -GUGGCCAGuaAGGCUGUCG---------GCU---UCGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 21418 | 0.71 | 0.457012 |
Target: 5'- --aCGGUCAUaugucUCCGGCAGCgGAAGa- -3' miRNA: 3'- gugGCCAGUA-----AGGCUGUCGgCUUCgc -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 27656 | 0.71 | 0.457012 |
Target: 5'- cCGCCGGUUAUUCggcgaaGACAGCCaGGGUu -3' miRNA: 3'- -GUGGCCAGUAAGg-----CUGUCGGcUUCGc -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 30429 | 0.74 | 0.308398 |
Target: 5'- cCACCGGUU--UCCGGuuGCCGGAcGCGg -3' miRNA: 3'- -GUGGCCAGuaAGGCUguCGGCUU-CGC- -5' |
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21747 | 3' | -55.3 | NC_004813.1 | + | 38008 | 1.08 | 0.001434 |
Target: 5'- gCACCGGUCAUUCCGACAGCCGAAGCGc -3' miRNA: 3'- -GUGGCCAGUAAGGCUGUCGGCUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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