miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21747 3' -55.3 NC_004813.1 + 28800 0.66 0.753812
Target:  5'- cCACCcaGUCGaaugagCCGcCAGCCGggGUGu -3'
miRNA:   3'- -GUGGc-CAGUaa----GGCuGUCGGCuuCGC- -5'
21747 3' -55.3 NC_004813.1 + 36760 0.66 0.733104
Target:  5'- aCACCGGUUuacCCuuCAGgCGAAGUGa -3'
miRNA:   3'- -GUGGCCAGuaaGGcuGUCgGCUUCGC- -5'
21747 3' -55.3 NC_004813.1 + 52488 0.67 0.701323
Target:  5'- cCACCGcugaacGUCAgcgUCUGAaagAGCUGGAGCGu -3'
miRNA:   3'- -GUGGC------CAGUa--AGGCUg--UCGGCUUCGC- -5'
21747 3' -55.3 NC_004813.1 + 45606 0.67 0.679785
Target:  5'- cCACUGGUCAgg-CG-CAGaCUGAAGCGc -3'
miRNA:   3'- -GUGGCCAGUaagGCuGUC-GGCUUCGC- -5'
21747 3' -55.3 NC_004813.1 + 42317 0.67 0.658069
Target:  5'- cCGCCGGUCAgccUCGcuCAGCCaGGGCa -3'
miRNA:   3'- -GUGGCCAGUaa-GGCu-GUCGGcUUCGc -5'
21747 3' -55.3 NC_004813.1 + 2707 0.69 0.560285
Target:  5'- -uUCGGcUCAUUCUGugGGCUGAccAGCa -3'
miRNA:   3'- guGGCC-AGUAAGGCugUCGGCU--UCGc -5'
21747 3' -55.3 NC_004813.1 + 45186 0.69 0.549595
Target:  5'- gCACCGGUC--UCCGGCAGUgucaccucaCGGuccAGCGu -3'
miRNA:   3'- -GUGGCCAGuaAGGCUGUCG---------GCU---UCGC- -5'
21747 3' -55.3 NC_004813.1 + 27656 0.71 0.457012
Target:  5'- cCGCCGGUUAUUCggcgaaGACAGCCaGGGUu -3'
miRNA:   3'- -GUGGCCAGUAAGg-----CUGUCGGcUUCGc -5'
21747 3' -55.3 NC_004813.1 + 21418 0.71 0.457012
Target:  5'- --aCGGUCAUaugucUCCGGCAGCgGAAGa- -3'
miRNA:   3'- gugGCCAGUA-----AGGCUGUCGgCUUCgc -5'
21747 3' -55.3 NC_004813.1 + 30429 0.74 0.308398
Target:  5'- cCACCGGUU--UCCGGuuGCCGGAcGCGg -3'
miRNA:   3'- -GUGGCCAGuaAGGCUguCGGCUU-CGC- -5'
21747 3' -55.3 NC_004813.1 + 38008 1.08 0.001434
Target:  5'- gCACCGGUCAUUCCGACAGCCGAAGCGc -3'
miRNA:   3'- -GUGGCCAGUAAGGCUGUCGGCUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.