miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21747 5' -55.8 NC_004813.1 + 25866 0.66 0.647739
Target:  5'- -gCggUUGGCUGUGguGCgcugUGGCUGGc -3'
miRNA:   3'- caGuuGACCGACACguCGa---GUCGGUC- -5'
21747 5' -55.8 NC_004813.1 + 37852 0.66 0.647739
Target:  5'- cGUCA---GGCUGcUGCGGC--AGCCAGg -3'
miRNA:   3'- -CAGUugaCCGAC-ACGUCGagUCGGUC- -5'
21747 5' -55.8 NC_004813.1 + 37325 0.67 0.603031
Target:  5'- cGUCAggcACUGgaacugaucGCUGaUGCAGagUCGGCCAGa -3'
miRNA:   3'- -CAGU---UGAC---------CGAC-ACGUCg-AGUCGGUC- -5'
21747 5' -55.8 NC_004813.1 + 46146 0.67 0.569734
Target:  5'- --aAGCUGGCUGUugucuauCAGCUCccacagccccugAGCCAGa -3'
miRNA:   3'- cagUUGACCGACAc------GUCGAG------------UCGGUC- -5'
21747 5' -55.8 NC_004813.1 + 22113 0.7 0.377041
Target:  5'- uUCGAaaUGGC-GUGaCAGCUCAGCCAc -3'
miRNA:   3'- cAGUUg-ACCGaCAC-GUCGAGUCGGUc -5'
21747 5' -55.8 NC_004813.1 + 47912 0.71 0.33404
Target:  5'- uUCAGCUGGaUUGUGCAGUUCuguaCCGGu -3'
miRNA:   3'- cAGUUGACC-GACACGUCGAGuc--GGUC- -5'
21747 5' -55.8 NC_004813.1 + 37972 1 0.003037
Target:  5'- -gUAACUGGCUGUGCAGCUCAGCCAGa -3'
miRNA:   3'- caGUUGACCGACACGUCGAGUCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.