miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21748 3' -50.2 NC_004813.1 + 51216 0.66 0.939521
Target:  5'- gCUCAGGCUcuggcagaacgAAGGGCGUgUUUCGCg -3'
miRNA:   3'- -GGGUCCGGua---------UUUCCGCAaAAGGUGg -5'
21748 3' -50.2 NC_004813.1 + 42958 0.67 0.923776
Target:  5'- aCCCagAGGuUCGUGAagacGGGCGUacaCCGCCu -3'
miRNA:   3'- -GGG--UCC-GGUAUU----UCCGCAaaaGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 21237 0.68 0.882407
Target:  5'- aUCAGGgUAUAAGGG-GUUauggCCACCg -3'
miRNA:   3'- gGGUCCgGUAUUUCCgCAAaa--GGUGG- -5'
21748 3' -50.2 NC_004813.1 + 37264 0.68 0.874535
Target:  5'- uUCCAGGUUAc---GGCGggUUUUCGCCa -3'
miRNA:   3'- -GGGUCCGGUauuuCCGCa-AAAGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 21181 0.68 0.873733
Target:  5'- -gCAGGCCAUugcggcgGAAGGUGaug-UCACCa -3'
miRNA:   3'- ggGUCCGGUA-------UUUCCGCaaaaGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 28563 0.68 0.866398
Target:  5'- gUCgGGGCCAgaauGGUGUagcCCGCCg -3'
miRNA:   3'- -GGgUCCGGUauuuCCGCAaaaGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 45035 0.69 0.854576
Target:  5'- gCCGGGaCCAUGAccGGCGgacguguccugUCCAUCg -3'
miRNA:   3'- gGGUCC-GGUAUUu-CCGCaaa--------AGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 15187 0.69 0.84936
Target:  5'- aUCAGGCCGU--GGGUGgaaaaagCCGCUg -3'
miRNA:   3'- gGGUCCGGUAuuUCCGCaaaa---GGUGG- -5'
21748 3' -50.2 NC_004813.1 + 28046 0.7 0.80273
Target:  5'- aUCCAGcGCCAgccuGGGGUcgguauuaauGUUcUCCACCa -3'
miRNA:   3'- -GGGUC-CGGUau--UUCCG----------CAAaAGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 36884 0.7 0.80273
Target:  5'- uUCCAGGCgUGUuuauAAGGCGgcgUUCCcCCg -3'
miRNA:   3'- -GGGUCCG-GUAu---UUCCGCaa-AAGGuGG- -5'
21748 3' -50.2 NC_004813.1 + 52563 0.7 0.793796
Target:  5'- gCCAGGCUuccgcuuauuuugcGAAGGCGgagUUCgACCg -3'
miRNA:   3'- gGGUCCGGua------------UUUCCGCaa-AAGgUGG- -5'
21748 3' -50.2 NC_004813.1 + 49726 0.7 0.793796
Target:  5'- gCCAGGCUuccgcuuauuuugcGAAGGCGgagUUCgACCg -3'
miRNA:   3'- gGGUCCGGua------------UUUCCGCaa-AAGgUGG- -5'
21748 3' -50.2 NC_004813.1 + 33201 0.7 0.772405
Target:  5'- -aCGGGCCucauuGGGCGUgagaagcguauUUUUCACCg -3'
miRNA:   3'- ggGUCCGGuauu-UCCGCA-----------AAAGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 29692 0.72 0.685723
Target:  5'- aCCAGGCCAUcaguGGCuga--CCACCa -3'
miRNA:   3'- gGGUCCGGUAuuu-CCGcaaaaGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 5062 0.72 0.672269
Target:  5'- cCCCAGGCCAgagccuuaGCGUUaacUUCCggaGCCa -3'
miRNA:   3'- -GGGUCCGGUauuuc---CGCAA---AAGG---UGG- -5'
21748 3' -50.2 NC_004813.1 + 28602 0.73 0.618072
Target:  5'- uCCCGcGCaggauUAAAGGCGUUagCCGCCa -3'
miRNA:   3'- -GGGUcCGgu---AUUUCCGCAAaaGGUGG- -5'
21748 3' -50.2 NC_004813.1 + 4163 0.75 0.539837
Target:  5'- -aCGGGCaaugcugcgAAGGGCGUUUUCCugCu -3'
miRNA:   3'- ggGUCCGgua------UUUCCGCAAAAGGugG- -5'
21748 3' -50.2 NC_004813.1 + 38590 1.15 0.001422
Target:  5'- aCCCAGGCCAUAAAGGCGUUUUCCACCu -3'
miRNA:   3'- -GGGUCCGGUAUUUCCGCAAAAGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.