Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21748 | 3' | -50.2 | NC_004813.1 | + | 51216 | 0.66 | 0.939521 |
Target: 5'- gCUCAGGCUcuggcagaacgAAGGGCGUgUUUCGCg -3' miRNA: 3'- -GGGUCCGGua---------UUUCCGCAaAAGGUGg -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 42958 | 0.67 | 0.923776 |
Target: 5'- aCCCagAGGuUCGUGAagacGGGCGUacaCCGCCu -3' miRNA: 3'- -GGG--UCC-GGUAUU----UCCGCAaaaGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 21237 | 0.68 | 0.882407 |
Target: 5'- aUCAGGgUAUAAGGG-GUUauggCCACCg -3' miRNA: 3'- gGGUCCgGUAUUUCCgCAAaa--GGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 37264 | 0.68 | 0.874535 |
Target: 5'- uUCCAGGUUAc---GGCGggUUUUCGCCa -3' miRNA: 3'- -GGGUCCGGUauuuCCGCa-AAAGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 21181 | 0.68 | 0.873733 |
Target: 5'- -gCAGGCCAUugcggcgGAAGGUGaug-UCACCa -3' miRNA: 3'- ggGUCCGGUA-------UUUCCGCaaaaGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 28563 | 0.68 | 0.866398 |
Target: 5'- gUCgGGGCCAgaauGGUGUagcCCGCCg -3' miRNA: 3'- -GGgUCCGGUauuuCCGCAaaaGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 45035 | 0.69 | 0.854576 |
Target: 5'- gCCGGGaCCAUGAccGGCGgacguguccugUCCAUCg -3' miRNA: 3'- gGGUCC-GGUAUUu-CCGCaaa--------AGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 15187 | 0.69 | 0.84936 |
Target: 5'- aUCAGGCCGU--GGGUGgaaaaagCCGCUg -3' miRNA: 3'- gGGUCCGGUAuuUCCGCaaaa---GGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 28046 | 0.7 | 0.80273 |
Target: 5'- aUCCAGcGCCAgccuGGGGUcgguauuaauGUUcUCCACCa -3' miRNA: 3'- -GGGUC-CGGUau--UUCCG----------CAAaAGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 36884 | 0.7 | 0.80273 |
Target: 5'- uUCCAGGCgUGUuuauAAGGCGgcgUUCCcCCg -3' miRNA: 3'- -GGGUCCG-GUAu---UUCCGCaa-AAGGuGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 52563 | 0.7 | 0.793796 |
Target: 5'- gCCAGGCUuccgcuuauuuugcGAAGGCGgagUUCgACCg -3' miRNA: 3'- gGGUCCGGua------------UUUCCGCaa-AAGgUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 49726 | 0.7 | 0.793796 |
Target: 5'- gCCAGGCUuccgcuuauuuugcGAAGGCGgagUUCgACCg -3' miRNA: 3'- gGGUCCGGua------------UUUCCGCaa-AAGgUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 33201 | 0.7 | 0.772405 |
Target: 5'- -aCGGGCCucauuGGGCGUgagaagcguauUUUUCACCg -3' miRNA: 3'- ggGUCCGGuauu-UCCGCA-----------AAAGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 29692 | 0.72 | 0.685723 |
Target: 5'- aCCAGGCCAUcaguGGCuga--CCACCa -3' miRNA: 3'- gGGUCCGGUAuuu-CCGcaaaaGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 5062 | 0.72 | 0.672269 |
Target: 5'- cCCCAGGCCAgagccuuaGCGUUaacUUCCggaGCCa -3' miRNA: 3'- -GGGUCCGGUauuuc---CGCAA---AAGG---UGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 28602 | 0.73 | 0.618072 |
Target: 5'- uCCCGcGCaggauUAAAGGCGUUagCCGCCa -3' miRNA: 3'- -GGGUcCGgu---AUUUCCGCAAaaGGUGG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 4163 | 0.75 | 0.539837 |
Target: 5'- -aCGGGCaaugcugcgAAGGGCGUUUUCCugCu -3' miRNA: 3'- ggGUCCGgua------UUUCCGCAAAAGGugG- -5' |
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21748 | 3' | -50.2 | NC_004813.1 | + | 38590 | 1.15 | 0.001422 |
Target: 5'- aCCCAGGCCAUAAAGGCGUUUUCCACCu -3' miRNA: 3'- -GGGUCCGGUAUUUCCGCAAAAGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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