miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21748 5' -50.8 NC_004813.1 + 38555 1.12 0.001893
Target:  5'- aCUACUGGAAACCGUUUCCGGCAUGGCc -3'
miRNA:   3'- -GAUGACCUUUGGCAAAGGCCGUACCG- -5'
21748 5' -50.8 NC_004813.1 + 32075 0.73 0.575087
Target:  5'- -gGCUGGAccAGCCuGUUUCaGGCgGUGGCu -3'
miRNA:   3'- gaUGACCU--UUGG-CAAAGgCCG-UACCG- -5'
21748 5' -50.8 NC_004813.1 + 35948 0.72 0.642667
Target:  5'- cCUGCUGGAuggcaGGCCGUcgguggcgcUUCCGuGgGUGGUu -3'
miRNA:   3'- -GAUGACCU-----UUGGCA---------AAGGC-CgUACCG- -5'
21748 5' -50.8 NC_004813.1 + 30625 0.71 0.698784
Target:  5'- -aACUGGAAGCCGguaaggCCGcCAcGGCg -3'
miRNA:   3'- gaUGACCUUUGGCaaa---GGCcGUaCCG- -5'
21748 5' -50.8 NC_004813.1 + 21131 0.71 0.720836
Target:  5'- -gGCUGGcAGCCGUUugguagUCCGGU--GGCc -3'
miRNA:   3'- gaUGACCuUUGGCAA------AGGCCGuaCCG- -5'
21748 5' -50.8 NC_004813.1 + 38632 0.7 0.753188
Target:  5'- -cGCUGGuuGCCGUcgggguugcCCGGUAcuuUGGCa -3'
miRNA:   3'- gaUGACCuuUGGCAaa-------GGCCGU---ACCG- -5'
21748 5' -50.8 NC_004813.1 + 703 0.69 0.814052
Target:  5'- -cACgGGGAGCUGguaucgCUGGCAUGGg -3'
miRNA:   3'- gaUGaCCUUUGGCaaa---GGCCGUACCg -5'
21748 5' -50.8 NC_004813.1 + 41144 0.68 0.832854
Target:  5'- -gGCUGGAAGa-GUUUUuaucgUGGCAUGGUg -3'
miRNA:   3'- gaUGACCUUUggCAAAG-----GCCGUACCG- -5'
21748 5' -50.8 NC_004813.1 + 6118 0.67 0.889688
Target:  5'- -gGCUGgGAAGCUGgcugaacgugUCGGCAUGGa -3'
miRNA:   3'- gaUGAC-CUUUGGCaaa-------GGCCGUACCg -5'
21748 5' -50.8 NC_004813.1 + 31473 0.67 0.905444
Target:  5'- gUGCUGGAcaucagccaGACCGca-CCGGUG-GGCu -3'
miRNA:   3'- gAUGACCU---------UUGGCaaaGGCCGUaCCG- -5'
21748 5' -50.8 NC_004813.1 + 16506 0.67 0.8758
Target:  5'- aUACU-GAGGCCGgaagcggggauUUUCCGGCG-GGUa -3'
miRNA:   3'- gAUGAcCUUUGGC-----------AAAGGCCGUaCCG- -5'
21748 5' -50.8 NC_004813.1 + 41439 0.67 0.8758
Target:  5'- ----aGGGAGCCGgugacCUGGCAggGGCg -3'
miRNA:   3'- gaugaCCUUUGGCaaa--GGCCGUa-CCG- -5'
21748 5' -50.8 NC_004813.1 + 39411 0.67 0.904758
Target:  5'- -gGCUGGaAGACCGUcgUgUGGCGUuaauucgucagcaGGCg -3'
miRNA:   3'- gaUGACC-UUUGGCAa-AgGCCGUA-------------CCG- -5'
21748 5' -50.8 NC_004813.1 + 30079 0.67 0.898451
Target:  5'- -gGCUGGAAAUCa----CGGCAacacUGGCg -3'
miRNA:   3'- gaUGACCUUUGGcaaagGCCGU----ACCG- -5'
21748 5' -50.8 NC_004813.1 + 45112 0.67 0.898451
Target:  5'- aCUGCcGGAGACCGgugCCGcCAcGGUg -3'
miRNA:   3'- -GAUGaCCUUUGGCaaaGGCcGUaCCG- -5'
21748 5' -50.8 NC_004813.1 + 53418 0.66 0.92939
Target:  5'- uUGCUGGAAagGCUGggccacacuccUCCGGCAgaaGCa -3'
miRNA:   3'- gAUGACCUU--UGGCaa---------AGGCCGUac-CG- -5'
21748 5' -50.8 NC_004813.1 + 30200 0.66 0.924697
Target:  5'- --cCUGGcAGCCaGUUgcgauggcauaUCCGGCAcgGGCu -3'
miRNA:   3'- gauGACCuUUGG-CAA-----------AGGCCGUa-CCG- -5'
21748 5' -50.8 NC_004813.1 + 31743 0.66 0.930534
Target:  5'- -aACaUGGAAaccagcuccACCGgcgaCGGCGUGGUa -3'
miRNA:   3'- gaUG-ACCUU---------UGGCaaagGCCGUACCG- -5'
21748 5' -50.8 NC_004813.1 + 49673 0.66 0.938216
Target:  5'- aUGCUGGcGAACCcagacacgcagaGUcUCCGGCGUacagccaaucuuuggGGCa -3'
miRNA:   3'- gAUGACC-UUUGG------------CAaAGGCCGUA---------------CCG- -5'
21748 5' -50.8 NC_004813.1 + 50399 0.66 0.934446
Target:  5'- -gGCUuaaGGAAGCCGgauuaCUGGCAucaacagggaguacUGGCg -3'
miRNA:   3'- gaUGA---CCUUUGGCaaa--GGCCGU--------------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.