Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21750 | 3' | -55.4 | NC_004813.1 | + | 48260 | 0.66 | 0.736333 |
Target: 5'- gCAGGCGGcagaaagugcaGCCUCaGCaaAGCAGUCagaggaUGCg -3' miRNA: 3'- gGUCUGCC-----------CGGAGaCG--UCGUUAG------ACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 28924 | 0.66 | 0.736333 |
Target: 5'- aCGGAcauccCGGGCgUaCUGCAGUuucuGUCUGa -3' miRNA: 3'- gGUCU-----GCCCGgA-GACGUCGu---UAGACg -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 34640 | 0.66 | 0.725779 |
Target: 5'- -uGGGgGGGCUcgCUGUGGCA--CUGCa -3' miRNA: 3'- ggUCUgCCCGGa-GACGUCGUuaGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 3426 | 0.66 | 0.715131 |
Target: 5'- gCCAGcACGGuagccggguuaGCCUCUGCuaugaauucAGC-GUUUGCa -3' miRNA: 3'- -GGUC-UGCC-----------CGGAGACG---------UCGuUAGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 34497 | 0.66 | 0.693602 |
Target: 5'- gCAuGACGGGUgaacgguuguuCUCUGUGGUggUCcgGCa -3' miRNA: 3'- gGU-CUGCCCG-----------GAGACGUCGuuAGa-CG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 4158 | 0.66 | 0.693602 |
Target: 5'- gCCuGACGGGCaaugCUGCgaagGGCGuuuucCUGCu -3' miRNA: 3'- -GGuCUGCCCGga--GACG----UCGUua---GACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 37016 | 0.66 | 0.682742 |
Target: 5'- aUCAGA--GGUaaugCUCUGCGGCuguUCUGCa -3' miRNA: 3'- -GGUCUgcCCG----GAGACGUCGuu-AGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 39712 | 0.66 | 0.682742 |
Target: 5'- uCUGGACaGGGCCagcucacgcUCUGUuuuugucagGGCAcUCUGCu -3' miRNA: 3'- -GGUCUG-CCCGG---------AGACG---------UCGUuAGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 52644 | 0.67 | 0.660891 |
Target: 5'- gCAGuACGGGgucggaCCgcuaUGCAGCGAaCUGCa -3' miRNA: 3'- gGUC-UGCCC------GGag--ACGUCGUUaGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 49817 | 0.67 | 0.627938 |
Target: 5'- gUCGGACcGGUa--UGCAGCGAaCUGCa -3' miRNA: 3'- -GGUCUGcCCGgagACGUCGUUaGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 37442 | 0.68 | 0.560217 |
Target: 5'- uCCGGGCGGGCUacuuuuuUCUGgccgacucugcauCAGCGAUCaGUu -3' miRNA: 3'- -GGUCUGCCCGG-------AGAC-------------GUCGUUAGaCG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 40865 | 0.7 | 0.45823 |
Target: 5'- gCCAGAUaGGGCCggaggCgGCAgGCAGUCUuguGCa -3' miRNA: 3'- -GGUCUG-CCCGGa----GaCGU-CGUUAGA---CG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 38973 | 0.71 | 0.410124 |
Target: 5'- uUCuGGCGGcGCUUCUgGCAGCAAuauuUCUGUu -3' miRNA: 3'- -GGuCUGCC-CGGAGA-CGUCGUU----AGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 33281 | 0.72 | 0.38281 |
Target: 5'- cUCAGGCGGucgcuGCCUCUGaCGGUAAUaagGCa -3' miRNA: 3'- -GGUCUGCC-----CGGAGAC-GUCGUUAga-CG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 39423 | 0.72 | 0.365285 |
Target: 5'- gCCAGACGGGacugCUCaaCGGCAAgCUGCu -3' miRNA: 3'- -GGUCUGCCCg---GAGacGUCGUUaGACG- -5' |
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21750 | 3' | -55.4 | NC_004813.1 | + | 38920 | 1.14 | 0.00043 |
Target: 5'- gCCAGACGGGCCUCUGCAGCAAUCUGCa -3' miRNA: 3'- -GGUCUGCCCGGAGACGUCGUUAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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