Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21751 | 5' | -54.1 | NC_004813.1 | + | 13561 | 0.71 | 0.455051 |
Target: 5'- -cACCGuUCGCCAGACCuuACCUUCGa -3' miRNA: 3'- auUGGC-AGUGGUUUGGcgUGGGAGUg -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 15562 | 0.68 | 0.660847 |
Target: 5'- -uGCUGUCGCCucauGCCGC-CCUUCu- -3' miRNA: 3'- auUGGCAGUGGuu--UGGCGuGGGAGug -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 15841 | 0.66 | 0.779182 |
Target: 5'- -uGCUGUCAUUuuuGCCGCGCgugCCUUACc -3' miRNA: 3'- auUGGCAGUGGuu-UGGCGUG---GGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 20751 | 0.66 | 0.768972 |
Target: 5'- aGGCCGaacUCACCGGGagGCACCCggCAUc -3' miRNA: 3'- aUUGGC---AGUGGUUUggCGUGGGa-GUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 25106 | 0.69 | 0.57172 |
Target: 5'- -cACCGacaGCCAAACCGgUAUCCUCAa -3' miRNA: 3'- auUGGCag-UGGUUUGGC-GUGGGAGUg -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 28070 | 0.66 | 0.736449 |
Target: 5'- gAACUG-CGCCAgcuuauaAGCCGCAUCCagCGCc -3' miRNA: 3'- aUUGGCaGUGGU-------UUGGCGUGGGa-GUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 31212 | 0.69 | 0.57172 |
Target: 5'- --uCCGUCaguACCGcaauGGCCGaCACCUUCGCa -3' miRNA: 3'- auuGGCAG---UGGU----UUGGC-GUGGGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 31388 | 0.66 | 0.779182 |
Target: 5'- ----gGUUACCGcuugaGGCCGUGCCCUuCACa -3' miRNA: 3'- auuggCAGUGGU-----UUGGCGUGGGA-GUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 31709 | 0.67 | 0.683062 |
Target: 5'- -uACUGUCGCCGgucggcucaGACUGCAUuuccagugaugCCUCGCg -3' miRNA: 3'- auUGGCAGUGGU---------UUGGCGUG-----------GGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 35308 | 0.66 | 0.748127 |
Target: 5'- --uCCG-CACCGGACUGCAUCCg--- -3' miRNA: 3'- auuGGCaGUGGUUUGGCGUGGGagug -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 35760 | 0.66 | 0.737517 |
Target: 5'- gGACCGUgaauaUGCC--ACCGCACCCguuugugCGCc -3' miRNA: 3'- aUUGGCA-----GUGGuuUGGCGUGGGa------GUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 37378 | 0.67 | 0.705076 |
Target: 5'- cAACCGggcaugUACCGGACCauagacggccaGCACCUgcUCACg -3' miRNA: 3'- aUUGGCa-----GUGGUUUGG-----------CGUGGG--AGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 40653 | 0.67 | 0.683062 |
Target: 5'- cAGCCaGUCACCAAugcuGCCGagaaAUCCUCccGCa -3' miRNA: 3'- aUUGG-CAGUGGUU----UGGCg---UGGGAG--UG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 40888 | 0.67 | 0.726797 |
Target: 5'- aGACCGgggaauaCACCAGAcCCGCACUgccgUUCAUa -3' miRNA: 3'- aUUGGCa------GUGGUUU-GGCGUGG----GAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 41115 | 1.07 | 0.001621 |
Target: 5'- aUAACCGUCACCAAACCGCACCCUCACc -3' miRNA: 3'- -AUUGGCAGUGGUUUGGCGUGGGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 41467 | 0.68 | 0.627344 |
Target: 5'- -uACCGcUCACCGccCUGCACCgUCAg -3' miRNA: 3'- auUGGC-AGUGGUuuGGCGUGGgAGUg -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 41805 | 0.66 | 0.768972 |
Target: 5'- aGGCCGUCAU--GGCCGUcaGCUCUgACa -3' miRNA: 3'- aUUGGCAGUGguUUGGCG--UGGGAgUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 42030 | 0.7 | 0.549763 |
Target: 5'- aAACCGccaaaauuagcCACCAuGCCGCGCaUCUCACa -3' miRNA: 3'- aUUGGCa----------GUGGUuUGGCGUG-GGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 42518 | 0.67 | 0.6941 |
Target: 5'- cUGACCGUugCGCC--ACCaGuCAUCCUCACg -3' miRNA: 3'- -AUUGGCA--GUGGuuUGG-C-GUGGGAGUG- -5' |
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21751 | 5' | -54.1 | NC_004813.1 | + | 43672 | 0.7 | 0.496168 |
Target: 5'- cAACCGgcgugugCGCCuuGCCGCcACCUUUACc -3' miRNA: 3'- aUUGGCa------GUGGuuUGGCG-UGGGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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