miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21751 5' -54.1 NC_004813.1 + 31212 0.69 0.57172
Target:  5'- --uCCGUCaguACCGcaauGGCCGaCACCUUCGCa -3'
miRNA:   3'- auuGGCAG---UGGU----UUGGC-GUGGGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 42030 0.7 0.549763
Target:  5'- aAACCGccaaaauuagcCACCAuGCCGCGCaUCUCACa -3'
miRNA:   3'- aUUGGCa----------GUGGUuUGGCGUG-GGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 43848 0.7 0.538882
Target:  5'- --cCCGgcgCGCCAGACCGCugUCaCACc -3'
miRNA:   3'- auuGGCa--GUGGUUUGGCGugGGaGUG- -5'
21751 5' -54.1 NC_004813.1 + 45061 0.7 0.505653
Target:  5'- --cCUGUCcaucgauGCCGccAGCCGCACCCUgACg -3'
miRNA:   3'- auuGGCAG-------UGGU--UUGGCGUGGGAgUG- -5'
21751 5' -54.1 NC_004813.1 + 43672 0.7 0.496168
Target:  5'- cAACCGgcgugugCGCCuuGCCGCcACCUUUACc -3'
miRNA:   3'- aUUGGCa------GUGGuuUGGCG-UGGGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 13561 0.71 0.455051
Target:  5'- -cACCGuUCGCCAGACCuuACCUUCGa -3'
miRNA:   3'- auUGGC-AGUGGUUUGGcgUGGGAGUg -5'
21751 5' -54.1 NC_004813.1 + 41115 1.07 0.001621
Target:  5'- aUAACCGUCACCAAACCGCACCCUCACc -3'
miRNA:   3'- -AUUGGCAGUGGUUUGGCGUGGGAGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.