miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21752 3' -55.2 NC_004813.1 + 28300 0.72 0.387985
Target:  5'- cGGGGAGuccUGCGCAcaguggguguUugACCUGGUGGCGg -3'
miRNA:   3'- -UCUUUU---GCGCGU----------AugUGGGCCGCCGC- -5'
21752 3' -55.2 NC_004813.1 + 26714 0.66 0.745799
Target:  5'- ---uGACGgGCAUAuuuuaugucugcugcCAgcuCCCGGCGGCa -3'
miRNA:   3'- ucuuUUGCgCGUAU---------------GU---GGGCCGCCGc -5'
21752 3' -55.2 NC_004813.1 + 48791 0.66 0.741637
Target:  5'- aGGAGAAacagGUGCGgcugGCCCGGUGGgGg -3'
miRNA:   3'- -UCUUUUg---CGCGUaug-UGGGCCGCCgC- -5'
21752 3' -55.2 NC_004813.1 + 42264 0.67 0.644706
Target:  5'- cAGAuAAaaaGCGCAcUGC-CCUGGUGGCu -3'
miRNA:   3'- -UCUuUUg--CGCGU-AUGuGGGCCGCCGc -5'
21752 3' -55.2 NC_004813.1 + 12900 0.69 0.579063
Target:  5'- -aGGAAUGCGCGUA-GCCCGuCGGCa -3'
miRNA:   3'- ucUUUUGCGCGUAUgUGGGCcGCCGc -5'
21752 3' -55.2 NC_004813.1 + 48112 0.69 0.525462
Target:  5'- aAGAGGugGCGCGUcACGCUgaGGaGGCGa -3'
miRNA:   3'- -UCUUUugCGCGUA-UGUGGg-CCgCCGC- -5'
21752 3' -55.2 NC_004813.1 + 21380 0.7 0.490099
Target:  5'- cAGcuGGCGCGCcgcaguacggugACACCgGGCGGUGc -3'
miRNA:   3'- -UCuuUUGCGCGua----------UGUGGgCCGCCGC- -5'
21752 3' -55.2 NC_004813.1 + 38913 0.71 0.453913
Target:  5'- cAGAAuGCGCGaacaGUACAa-CGGCGGUGg -3'
miRNA:   3'- -UCUUuUGCGCg---UAUGUggGCCGCCGC- -5'
21752 3' -55.2 NC_004813.1 + 42038 0.71 0.415471
Target:  5'- ------gGCGCAU--GCCCGGCGGUGu -3'
miRNA:   3'- ucuuuugCGCGUAugUGGGCCGCCGC- -5'
21752 3' -55.2 NC_004813.1 + 42945 0.69 0.536049
Target:  5'- uGAAGACGgGCGUACACcgccuCCGGUGcCGu -3'
miRNA:   3'- uCUUUUGCgCGUAUGUG-----GGCCGCcGC- -5'
21752 3' -55.2 NC_004813.1 + 32660 0.71 0.444119
Target:  5'- ---cGGCG-GCAUACA-CCGGCGGCa -3'
miRNA:   3'- ucuuUUGCgCGUAUGUgGGCCGCCGc -5'
21752 3' -55.2 NC_004813.1 + 41699 1.1 0.000993
Target:  5'- cAGAAAACGCGCAUACACCCGGCGGCGg -3'
miRNA:   3'- -UCUUUUGCGCGUAUGUGGGCCGCCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.