Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 47167 | 0.66 | 0.775764 |
Target: 5'- -uAUCCGGuGCACCUGcAugGGCGu-- -3' miRNA: 3'- cuUAGGCC-CGUGGACaUugCUGUcgc -5' |
|||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 21334 | 0.67 | 0.755252 |
Target: 5'- --cUCCGGGuCGCUgGUGGCacuGACAGCc -3' miRNA: 3'- cuuAGGCCC-GUGGaCAUUG---CUGUCGc -5' |
|||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 30352 | 0.69 | 0.613621 |
Target: 5'- --uUCgCGGGCACg-GUGACGGCAGaCa -3' miRNA: 3'- cuuAG-GCCCGUGgaCAUUGCUGUC-Gc -5' |
|||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 45118 | 0.7 | 0.580487 |
Target: 5'- gGAGaCCGGuGCcgccacggugaACCUGauUAACGGCAGCGg -3' miRNA: 3'- -CUUaGGCC-CG-----------UGGAC--AUUGCUGUCGC- -5' |
|||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 37793 | 0.71 | 0.494603 |
Target: 5'- aGAUCCagcGGGCGuCCcGUAugGGCAGUGa -3' miRNA: 3'- cUUAGG---CCCGU-GGaCAUugCUGUCGC- -5' |
|||||||
21753 | 3' | -53.8 | NC_004813.1 | + | 42863 | 1.08 | 0.00179 |
Target: 5'- gGAAUCCGGGCACCUGUAACGACAGCGc -3' miRNA: 3'- -CUUAGGCCCGUGGACAUUGCUGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home