miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21754 3' -53.9 NC_004813.1 + 40461 0.66 0.808668
Target:  5'- aCCCuccGUcgCAaGCUGuGCugCCuGUGAg -3'
miRNA:   3'- -GGGu--CAuaGUaCGAC-CGugGGuCACU- -5'
21754 3' -53.9 NC_004813.1 + 21366 0.66 0.767958
Target:  5'- aCCCGcGUAUUAagcaGCUGGCGCgCCgcaguacGGUGAc -3'
miRNA:   3'- -GGGU-CAUAGUa---CGACCGUG-GG-------UCACU- -5'
21754 3' -53.9 NC_004813.1 + 45415 0.67 0.726994
Target:  5'- uUCCGGUA-CGUGCU-GCACCgCcGUGAu -3'
miRNA:   3'- -GGGUCAUaGUACGAcCGUGG-GuCACU- -5'
21754 3' -53.9 NC_004813.1 + 45802 0.67 0.716225
Target:  5'- gCCCGGUGUCAgcucaaucgugGCgGGUACCgCAGg-- -3'
miRNA:   3'- -GGGUCAUAGUa----------CGaCCGUGG-GUCacu -5'
21754 3' -53.9 NC_004813.1 + 3501 0.69 0.605749
Target:  5'- aCCCGGcUAcCGUGCUGGCACugCUGGaUGAa -3'
miRNA:   3'- -GGGUC-AUaGUACGACCGUG--GGUC-ACU- -5'
21754 3' -53.9 NC_004813.1 + 21469 0.69 0.583606
Target:  5'- gCCCGGUGUCAccguacUGC-GGCGCgCCAGcUGc -3'
miRNA:   3'- -GGGUCAUAGU------ACGaCCGUG-GGUC-ACu -5'
21754 3' -53.9 NC_004813.1 + 38256 0.72 0.417222
Target:  5'- aCCCAGUucaGUCAggcGCUGGCGCagGGUGu -3'
miRNA:   3'- -GGGUCA---UAGUa--CGACCGUGggUCACu -5'
21754 3' -53.9 NC_004813.1 + 41792 0.75 0.305373
Target:  5'- uCCCGGUcgcAUCAUGCUGGCGaacaCCuguauGUGGg -3'
miRNA:   3'- -GGGUCA---UAGUACGACCGUg---GGu----CACU- -5'
21754 3' -53.9 NC_004813.1 + 5292 0.76 0.248129
Target:  5'- gUCCGGUGUCAUGCUGcCACCuucugcuCAGUGGc -3'
miRNA:   3'- -GGGUCAUAGUACGACcGUGG-------GUCACU- -5'
21754 3' -53.9 NC_004813.1 + 49689 0.8 0.148706
Target:  5'- cCCCGGUAucccgcUCAUGCUGGCgaACCCAGa-- -3'
miRNA:   3'- -GGGUCAU------AGUACGACCG--UGGGUCacu -5'
21754 3' -53.9 NC_004813.1 + 52526 0.8 0.148706
Target:  5'- cCCCGGUAucccgcUCAUGCUGGCgaACCCAGa-- -3'
miRNA:   3'- -GGGUCAU------AGUACGACCG--UGGGUCacu -5'
21754 3' -53.9 NC_004813.1 + 43158 1.12 0.000885
Target:  5'- aCCCAGUAUCAUGCUGGCACCCAGUGAa -3'
miRNA:   3'- -GGGUCAUAGUACGACCGUGGGUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.