miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21754 5' -60.6 NC_004813.1 + 12860 0.66 0.442677
Target:  5'- aGACuCGCCGGgaaagUUGCCAGuaacuGGCUGAACacaCCg -3'
miRNA:   3'- -UUG-GUGGCC-----GACGGUC-----CCGACUUG---GG- -5'
21754 5' -60.6 NC_004813.1 + 34306 0.66 0.433229
Target:  5'- uGCCcuGCCGGCU-CCGcaggacGGGCgUGAugCCa -3'
miRNA:   3'- uUGG--UGGCCGAcGGU------CCCG-ACUugGG- -5'
21754 5' -60.6 NC_004813.1 + 38885 0.66 0.418359
Target:  5'- -cCCGCgGGCUGCCGccacGGccuGCUGAgcacgguacacggcuGCCCu -3'
miRNA:   3'- uuGGUGgCCGACGGU----CC---CGACU---------------UGGG- -5'
21754 5' -60.6 NC_004813.1 + 32162 0.66 0.41469
Target:  5'- cAGCCACCGcCUGaaaCA-GGCUGGuccaGCCCg -3'
miRNA:   3'- -UUGGUGGCcGACg--GUcCCGACU----UGGG- -5'
21754 5' -60.6 NC_004813.1 + 41065 0.66 0.41469
Target:  5'- cGCCGCCcca---CAGGGCUGAAUCCu -3'
miRNA:   3'- uUGGUGGccgacgGUCCCGACUUGGG- -5'
21754 5' -60.6 NC_004813.1 + 34848 0.66 0.405605
Target:  5'- uACCGCCGuGCUGCuggccuacauuCAGGGC--AGCCg -3'
miRNA:   3'- uUGGUGGC-CGACG-----------GUCCCGacUUGGg -5'
21754 5' -60.6 NC_004813.1 + 48607 0.66 0.387817
Target:  5'- --aCACCGGCccUGUCGGGGC--AACCg -3'
miRNA:   3'- uugGUGGCCG--ACGGUCCCGacUUGGg -5'
21754 5' -60.6 NC_004813.1 + 24324 0.66 0.387817
Target:  5'- cGGCCugUcGGCUGCCGuucuGGcGCUGAuuGCCg -3'
miRNA:   3'- -UUGGugG-CCGACGGU----CC-CGACU--UGGg -5'
21754 5' -60.6 NC_004813.1 + 30957 0.67 0.370548
Target:  5'- aGACCAUUaucgGGCgauuugGUCAGGGCgGGAUCCc -3'
miRNA:   3'- -UUGGUGG----CCGa-----CGGUCCCGaCUUGGG- -5'
21754 5' -60.6 NC_004813.1 + 42320 0.67 0.352169
Target:  5'- cAGCCGCCGGUcagccucgcucaGCCAGGGCaGuccACCg -3'
miRNA:   3'- -UUGGUGGCCGa-----------CGGUCCCGaCu--UGGg -5'
21754 5' -60.6 NC_004813.1 + 48328 0.67 0.345648
Target:  5'- -uCUGCCGcCUGCC-GGGCUGAcUCCg -3'
miRNA:   3'- uuGGUGGCcGACGGuCCCGACUuGGG- -5'
21754 5' -60.6 NC_004813.1 + 21704 0.68 0.329726
Target:  5'- uGCCAUCGGCU-CCGGuggugaacGCUGAACCa -3'
miRNA:   3'- uUGGUGGCCGAcGGUCc-------CGACUUGGg -5'
21754 5' -60.6 NC_004813.1 + 21218 0.68 0.292319
Target:  5'- uGGCCACCGGaCUaCCAaacGGCUGccAGCCCu -3'
miRNA:   3'- -UUGGUGGCC-GAcGGUc--CCGAC--UUGGG- -5'
21754 5' -60.6 NC_004813.1 + 27654 0.69 0.276257
Target:  5'- uGCCGCCGGUUauucggcgaagacaGCCAGGGUUaaaGGCUCg -3'
miRNA:   3'- uUGGUGGCCGA--------------CGGUCCCGAc--UUGGG- -5'
21754 5' -60.6 NC_004813.1 + 38627 0.69 0.271511
Target:  5'- gGGCgCGCUGGUUGCCgucGGGGUU--GCCCg -3'
miRNA:   3'- -UUG-GUGGCCGACGG---UCCCGAcuUGGG- -5'
21754 5' -60.6 NC_004813.1 + 48692 0.69 0.271511
Target:  5'- -uUCGCCGGUUGCCccgacAGGGCcGGugUCa -3'
miRNA:   3'- uuGGUGGCCGACGG-----UCCCGaCUugGG- -5'
21754 5' -60.6 NC_004813.1 + 38340 0.69 0.264845
Target:  5'- cGugCACUGGCUGCgGguauGGGCguGGCCCg -3'
miRNA:   3'- -UugGUGGCCGACGgU----CCCGacUUGGG- -5'
21754 5' -60.6 NC_004813.1 + 30127 0.7 0.245641
Target:  5'- cGCaACUGGCUGCCA-GGCUGGaugagGCCUg -3'
miRNA:   3'- uUGgUGGCCGACGGUcCCGACU-----UGGG- -5'
21754 5' -60.6 NC_004813.1 + 32583 0.76 0.093899
Target:  5'- uGCCGCCGGUguaUGCCGccGGGCUGGcgGCCa -3'
miRNA:   3'- uUGGUGGCCG---ACGGU--CCCGACU--UGGg -5'
21754 5' -60.6 NC_004813.1 + 43109 1.08 0.000333
Target:  5'- aAACCACCGGCUGCCAGGGCUGAACCCc -3'
miRNA:   3'- -UUGGUGGCCGACGGUCCCGACUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.