Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21756 | 3' | -61.8 | NC_004813.1 | + | 52546 | 0.67 | 0.335205 |
Target: 5'- gGUGa--GCCCUccaUCACCGCCCcCGGUa -3' miRNA: 3'- -CGCgugCGGGA---AGUGGUGGGcGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 49715 | 0.7 | 0.228301 |
Target: 5'- aGCGCuggugaGCCCaccaUCACCGCCCcCGGUa -3' miRNA: 3'- -CGCGug----CGGGa---AGUGGUGGGcGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 45584 | 1.09 | 0.00026 |
Target: 5'- aGCGCACGCCCUUCACCACCCGCGGCGu -3' miRNA: 3'- -CGCGUGCGGGAAGUGGUGGGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 42273 | 0.68 | 0.320045 |
Target: 5'- aGCGCACuGCCCUgguggCuggUCugCCGgGGUGa -3' miRNA: 3'- -CGCGUG-CGGGAa----Gu--GGugGGCgCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 42038 | 0.7 | 0.216632 |
Target: 5'- gGCGCAUGCCCggcggugugCGCCugCggagucgUGCGGCu -3' miRNA: 3'- -CGCGUGCGGGaa-------GUGGugG-------GCGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 41990 | 0.68 | 0.315598 |
Target: 5'- cGCGCAUGCacuugcugcaucuguCCUUCGgaUAUCCGUGGUGg -3' miRNA: 3'- -CGCGUGCG---------------GGAAGUg-GUGGGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 41465 | 0.71 | 0.200852 |
Target: 5'- cCGCucacCGCCCUgcaccgucaggUCgauuucccagagcACCACCCGCGGUGa -3' miRNA: 3'- cGCGu---GCGGGA-----------AG-------------UGGUGGGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 40840 | 0.68 | 0.291283 |
Target: 5'- cGCGCACacccagcgaGCCaucCGCCGCCCGCgucagaGGCa -3' miRNA: 3'- -CGCGUG---------CGGgaaGUGGUGGGCG------CCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 38846 | 0.66 | 0.427664 |
Target: 5'- -gGC-UGCCCUUgC-CCGCgCCGUGGCa -3' miRNA: 3'- cgCGuGCGGGAA-GuGGUG-GGCGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 31716 | 0.68 | 0.320045 |
Target: 5'- aGCGCuggaucaacugGCGUCg-UCGCCguaCCGCGGCGg -3' miRNA: 3'- -CGCG-----------UGCGGgaAGUGGug-GGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 30601 | 0.72 | 0.168315 |
Target: 5'- aGCGUGCGCCCUUC-CU--CUGCGGCu -3' miRNA: 3'- -CGCGUGCGGGAAGuGGugGGCGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 22278 | 0.66 | 0.383775 |
Target: 5'- -gGUGCGCCCgUCAUCGCCUucCGGUGc -3' miRNA: 3'- cgCGUGCGGGaAGUGGUGGGc-GCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 21478 | 0.72 | 0.164012 |
Target: 5'- uGCuGCAcCGCCCggugUCACCguaCUGCGGCGc -3' miRNA: 3'- -CG-CGU-GCGGGa---AGUGGug-GGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 12810 | 0.66 | 0.383775 |
Target: 5'- cUGCGCuaCCUgUugUACCUGCGGCu -3' miRNA: 3'- cGCGUGcgGGAaGugGUGGGCGCCGc -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 12429 | 0.67 | 0.364615 |
Target: 5'- -gGCGCGauagUCUUCACCAugucaaacauccacUCUGCGGCGg -3' miRNA: 3'- cgCGUGCg---GGAAGUGGU--------------GGGCGCCGC- -5' |
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21756 | 3' | -61.8 | NC_004813.1 | + | 4243 | 0.66 | 0.418649 |
Target: 5'- ---aACGCCCUUCGCagcauuGCCCGUcaGGCu -3' miRNA: 3'- cgcgUGCGGGAAGUGg-----UGGGCG--CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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