miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21756 5' -56.9 NC_004813.1 + 2566 0.72 0.30538
Target:  5'- aUGCGCCAGcccAUAuCUGGCUGcaaaCGGCUGg -3'
miRNA:   3'- -ACGCGGUC---UAU-GACCGGCa---GUCGACg -5'
21756 5' -56.9 NC_004813.1 + 12668 0.66 0.59977
Target:  5'- -uUGUCAGGUcgaguuuugguuuGCUGGCUGUCAcGcCUGCc -3'
miRNA:   3'- acGCGGUCUA-------------UGACCGGCAGU-C-GACG- -5'
21756 5' -56.9 NC_004813.1 + 14692 0.69 0.406176
Target:  5'- cGCGUCAGGUGCuaUGGCaugGUCAacgGCUGg -3'
miRNA:   3'- aCGCGGUCUAUG--ACCGg--CAGU---CGACg -5'
21756 5' -56.9 NC_004813.1 + 15035 0.69 0.443146
Target:  5'- aUGCaCUGGAUAuugaguuuggauuCUGGCUGgauUCAGCUGCg -3'
miRNA:   3'- -ACGcGGUCUAU-------------GACCGGC---AGUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 25842 0.67 0.525462
Target:  5'- cUGUGUguGGUGauuauugucCUGGCgGUUGGCUGUg -3'
miRNA:   3'- -ACGCGguCUAU---------GACCGgCAGUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 27980 0.66 0.633738
Target:  5'- gGCGCUGGAUGC-GGCUuauaAGCUGg -3'
miRNA:   3'- aCGCGGUCUAUGaCCGGcag-UCGACg -5'
21756 5' -56.9 NC_004813.1 + 30110 0.72 0.297903
Target:  5'- cGUGCCGGAUaugccaucgcaACUGGCUGcCAGgCUGg -3'
miRNA:   3'- aCGCGGUCUA-----------UGACCGGCaGUC-GACg -5'
21756 5' -56.9 NC_004813.1 + 31488 0.68 0.503496
Target:  5'- aGCGCCAGAgcauuggUGCUGGacaucagccagaCCGcaccggUgGGCUGCa -3'
miRNA:   3'- aCGCGGUCU-------AUGACC------------GGC------AgUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 31716 0.67 0.545641
Target:  5'- aGCGCUGGAUcaACUGGCguCGUCGccguaccGCgGCg -3'
miRNA:   3'- aCGCGGUCUA--UGACCG--GCAGU-------CGaCG- -5'
21756 5' -56.9 NC_004813.1 + 35378 0.71 0.318419
Target:  5'- cGUGCCGGAUGCgaccggcgGGCgucuggaaauucucUGUCGGCUGg -3'
miRNA:   3'- aCGCGGUCUAUGa-------CCG--------------GCAGUCGACg -5'
21756 5' -56.9 NC_004813.1 + 35949 0.68 0.473843
Target:  5'- -cUGCUGGAUgGCaGGCCGUCGGUgGCg -3'
miRNA:   3'- acGCGGUCUA-UGaCCGGCAGUCGaCG- -5'
21756 5' -56.9 NC_004813.1 + 37277 0.7 0.397014
Target:  5'- cGUGagCAGGUGCUGGCCGUCuauGGUccgguacaUGCc -3'
miRNA:   3'- aCGCg-GUCUAUGACCGGCAG---UCG--------ACG- -5'
21756 5' -56.9 NC_004813.1 + 37880 0.76 0.146236
Target:  5'- aGCGCCGGGcuCUGGCUG--AGCUGCa -3'
miRNA:   3'- aCGCGGUCUauGACCGGCagUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 37985 0.67 0.567144
Target:  5'- aGCG-CGGAUuuccguaACUGGCUGUgCAGCUcaGCc -3'
miRNA:   3'- aCGCgGUCUA-------UGACCGGCA-GUCGA--CG- -5'
21756 5' -56.9 NC_004813.1 + 39549 0.69 0.424895
Target:  5'- aGCGgCAGggACUGgugaauguGCCGUuaCGGCUGCc -3'
miRNA:   3'- aCGCgGUCuaUGAC--------CGGCA--GUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 40862 0.68 0.473843
Target:  5'- aUG-GCCAGAUAg-GGCCGgaggCGGCagGCa -3'
miRNA:   3'- -ACgCGGUCUAUgaCCGGCa---GUCGa-CG- -5'
21756 5' -56.9 NC_004813.1 + 40983 0.67 0.536049
Target:  5'- -cCGCCugcacccGCUGGUCaUCAGCUGCa -3'
miRNA:   3'- acGCGGucua---UGACCGGcAGUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 45544 1.12 0.000383
Target:  5'- cUGCGCCAGAUACUGGCCGUCAGCUGCg -3'
miRNA:   3'- -ACGCGGUCUAUGACCGGCAGUCGACG- -5'
21756 5' -56.9 NC_004813.1 + 47235 0.66 0.622769
Target:  5'- gUGCaCCGGAUAC-GGCCagacaaauGGCUGCg -3'
miRNA:   3'- -ACGcGGUCUAUGaCCGGcag-----UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.