miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21758 3' -53.9 NC_004813.1 + 31285 0.66 0.797393
Target:  5'- ---cGCCACcaccgcuUCCGCCAgCGCAuUACGg -3'
miRNA:   3'- cauuCGGUGu------GGGCGGUaGCGU-AUGC- -5'
21758 3' -53.9 NC_004813.1 + 11314 0.66 0.787514
Target:  5'- -aAGGCCACAUgCGuuuCCA-CGCAUACc -3'
miRNA:   3'- caUUCGGUGUGgGC---GGUaGCGUAUGc -5'
21758 3' -53.9 NC_004813.1 + 33578 0.66 0.787514
Target:  5'- gGUAAGCCAUAUCC-CUGUucCGCGUgACGg -3'
miRNA:   3'- -CAUUCGGUGUGGGcGGUA--GCGUA-UGC- -5'
21758 3' -53.9 NC_004813.1 + 39006 0.66 0.787514
Target:  5'- cGUGAGCC-CA-CCGCCGUUGUAc--- -3'
miRNA:   3'- -CAUUCGGuGUgGGCGGUAGCGUaugc -5'
21758 3' -53.9 NC_004813.1 + 41558 0.66 0.777469
Target:  5'- -aAAGCCACugCC-CUcaAUCGgGUACGc -3'
miRNA:   3'- caUUCGGUGugGGcGG--UAGCgUAUGC- -5'
21758 3' -53.9 NC_004813.1 + 35460 0.66 0.777469
Target:  5'- ------gACGCCCGCCGgUCGCAUcCGg -3'
miRNA:   3'- cauucggUGUGGGCGGU-AGCGUAuGC- -5'
21758 3' -53.9 NC_004813.1 + 50211 0.66 0.771368
Target:  5'- ---uGCCACGaacugacgguuuaCGCgGUCGCAUGCGg -3'
miRNA:   3'- cauuCGGUGUgg-----------GCGgUAGCGUAUGC- -5'
21758 3' -53.9 NC_004813.1 + 31632 0.66 0.75693
Target:  5'- cUGAGCCGaccggcgacagUACCaCGCCGUCGCcgGUGg -3'
miRNA:   3'- cAUUCGGU-----------GUGG-GCGGUAGCGuaUGC- -5'
21758 3' -53.9 NC_004813.1 + 42120 0.68 0.659408
Target:  5'- --cAGgCGCACaCCGCCGg-GCAUGCGc -3'
miRNA:   3'- cauUCgGUGUG-GGCGGUagCGUAUGC- -5'
21758 3' -53.9 NC_004813.1 + 12640 0.69 0.637159
Target:  5'- ---uGUCACGCCUGCCuGUUGCuuguUACGg -3'
miRNA:   3'- cauuCGGUGUGGGCGG-UAGCGu---AUGC- -5'
21758 3' -53.9 NC_004813.1 + 44969 0.69 0.626023
Target:  5'- gGUGGGCCugACCCGaCUggUGCAgcCGa -3'
miRNA:   3'- -CAUUCGGugUGGGC-GGuaGCGUauGC- -5'
21758 3' -53.9 NC_004813.1 + 18618 0.69 0.602665
Target:  5'- -cGAGCCauACACCCGCauauaauCAUCGCGUcauCGu -3'
miRNA:   3'- caUUCGG--UGUGGGCG-------GUAGCGUAu--GC- -5'
21758 3' -53.9 NC_004813.1 + 22275 0.71 0.50588
Target:  5'- -aGAGgUGCGCCCGUCAUCGCcuuccgGUGCa -3'
miRNA:   3'- caUUCgGUGUGGGCGGUAGCG------UAUGc -5'
21758 3' -53.9 NC_004813.1 + 38428 0.71 0.495383
Target:  5'- -cGGGCCACGCCCauacccgcaGCCAgUGCAcgUACGa -3'
miRNA:   3'- caUUCGGUGUGGG---------CGGUaGCGU--AUGC- -5'
21758 3' -53.9 NC_004813.1 + 22568 0.72 0.424975
Target:  5'- -aGAGCCGCACCguUGCCcgCgGCGUACu -3'
miRNA:   3'- caUUCGGUGUGG--GCGGuaG-CGUAUGc -5'
21758 3' -53.9 NC_004813.1 + 47538 1.08 0.001653
Target:  5'- uGUAAGCCACACCCGCCAUCGCAUACGc -3'
miRNA:   3'- -CAUUCGGUGUGGGCGGUAGCGUAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.