miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21761 5' -53.5 NC_004813.1 + 12047 0.87 0.046907
Target:  5'- -uGGuGCAUCCCUCAAAACGAGGGAGg -3'
miRNA:   3'- cuCCcUGUAGGGAGUUUUGCUCCCUU- -5'
21761 5' -53.5 NC_004813.1 + 12084 1.06 0.002181
Target:  5'- uGAGGGACAUCCCUCAAAACGAGGGAAa -3'
miRNA:   3'- -CUCCCUGUAGGGAGUUUUGCUCCCUU- -5'
21761 5' -53.5 NC_004813.1 + 12148 0.8 0.155065
Target:  5'- aGGGGAUugcuAUCCCUCAAAACaGGGGGAc -3'
miRNA:   3'- cUCCCUG----UAGGGAGUUUUG-CUCCCUu -5'
21761 5' -53.5 NC_004813.1 + 12156 0.76 0.260214
Target:  5'- uGAGGGAUGUCCCUCAuuuuaGGGGAAc -3'
miRNA:   3'- -CUCCCUGUAGGGAGUuuugcUCCCUU- -5'
21761 5' -53.5 NC_004813.1 + 12223 0.69 0.618761
Target:  5'- uGAGGGAUagcaAUCCCcUAAuuUGAGGGAu -3'
miRNA:   3'- -CUCCCUG----UAGGGaGUUuuGCUCCCUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.