miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21762 3' -49.4 NC_004813.1 + 25761 0.66 0.962562
Target:  5'- uGGUUG-CCAUUUUcuuUUCCAcCGCCUGGc -3'
miRNA:   3'- -UUAGCuGGUAAAG---AAGGUaGUGGGCC- -5'
21762 3' -49.4 NC_004813.1 + 29033 0.69 0.872755
Target:  5'- gGAUUGACCAUggcgaggUUUUCCAUCAgcaggugagcCCCGc -3'
miRNA:   3'- -UUAGCUGGUAa------AGAAGGUAGU----------GGGCc -5'
21762 3' -49.4 NC_004813.1 + 20267 0.71 0.797719
Target:  5'- uAUUGugCGUaaucccacggacUCUUCCAUCugCCGGa -3'
miRNA:   3'- uUAGCugGUAa-----------AGAAGGUAGugGGCC- -5'
21762 3' -49.4 NC_004813.1 + 41194 0.72 0.714715
Target:  5'- gGGUUGAC----UCaUCCGUCACCCGGa -3'
miRNA:   3'- -UUAGCUGguaaAGaAGGUAGUGGGCC- -5'
21762 3' -49.4 NC_004813.1 + 12924 1.1 0.003645
Target:  5'- gAAUCGACCAUUUCUUCCAUCACCCGGg -3'
miRNA:   3'- -UUAGCUGGUAAAGAAGGUAGUGGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.