miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21762 5' -55.4 NC_004813.1 + 48598 0.66 0.723767
Target:  5'- aGCGUGGUGacaCCGGcccuGucGggGCAaCCGg -3'
miRNA:   3'- aCGUACCAC---GGCC----CuuCuuCGUaGGC- -5'
21762 5' -55.4 NC_004813.1 + 35214 0.66 0.669488
Target:  5'- gGCA-GGagcaGCCGGGAgcGGAuGCAgUCCGg -3'
miRNA:   3'- aCGUaCCa---CGGCCCU--UCUuCGU-AGGC- -5'
21762 5' -55.4 NC_004813.1 + 29028 0.67 0.625358
Target:  5'- aGCccGGgagGCUGGuGAGGAAGCAUUUc -3'
miRNA:   3'- aCGuaCCa--CGGCC-CUUCUUCGUAGGc -5'
21762 5' -55.4 NC_004813.1 + 31874 0.67 0.614315
Target:  5'- cGCAUGaUGcCCGGGccGggGaUAUCCGu -3'
miRNA:   3'- aCGUACcAC-GGCCCuuCuuC-GUAGGC- -5'
21762 5' -55.4 NC_004813.1 + 27557 0.68 0.581317
Target:  5'- gUGCGuucUGGacCCGGGAGGAGGCugugCUGa -3'
miRNA:   3'- -ACGU---ACCacGGCCCUUCUUCGua--GGC- -5'
21762 5' -55.4 NC_004813.1 + 18756 0.7 0.435475
Target:  5'- aGCGUGaauUGCCGGGAGGGAGaaccUCUGu -3'
miRNA:   3'- aCGUACc--ACGGCCCUUCUUCgu--AGGC- -5'
21762 5' -55.4 NC_004813.1 + 37088 0.71 0.397727
Target:  5'- aGCGUGGUGCUGcGGGAGccuucGGCAgaggCCu -3'
miRNA:   3'- aCGUACCACGGC-CCUUCu----UCGUa---GGc -5'
21762 5' -55.4 NC_004813.1 + 12959 1 0.004141
Target:  5'- uUGCAUGGUGCCGGG-AGAAGCAUCCGu -3'
miRNA:   3'- -ACGUACCACGGCCCuUCUUCGUAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.