miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21762	5'	-55.4	NC_004813.1	+	48598	0.66	0.723767
	Target:  5'- aGCGUGGUGacaCCGGcccuGucGggGCAaCCGg -3' miRNA:   3'- aCGUACCAC---GGCC----CuuCuuCGUaGGC- -5'
21762	5'	-55.4	NC_004813.1	+	35214	0.66	0.669488
	Target:  5'- gGCA-GGagcaGCCGGGAgcGGAuGCAgUCCGg -3' miRNA:   3'- aCGUaCCa---CGGCCCU--UCUuCGU-AGGC- -5'
21762	5'	-55.4	NC_004813.1	+	29028	0.67	0.625358
	Target:  5'- aGCccGGgagGCUGGuGAGGAAGCAUUUc -3' miRNA:   3'- aCGuaCCa--CGGCC-CUUCUUCGUAGGc -5'
21762	5'	-55.4	NC_004813.1	+	31874	0.67	0.614315
	Target:  5'- cGCAUGaUGcCCGGGccGggGaUAUCCGu -3' miRNA:   3'- aCGUACcAC-GGCCCuuCuuC-GUAGGC- -5'
21762	5'	-55.4	NC_004813.1	+	27557	0.68	0.581317
	Target:  5'- gUGCGuucUGGacCCGGGAGGAGGCugugCUGa -3' miRNA:   3'- -ACGU---ACCacGGCCCUUCUUCGua--GGC- -5'
21762	5'	-55.4	NC_004813.1	+	18756	0.7	0.435475
	Target:  5'- aGCGUGaauUGCCGGGAGGGAGaaccUCUGu -3' miRNA:   3'- aCGUACc--ACGGCCCUUCUUCgu--AGGC- -5'
21762	5'	-55.4	NC_004813.1	+	37088	0.71	0.397727
	Target:  5'- aGCGUGGUGCUGcGGGAGccuucGGCAgaggCCu -3' miRNA:   3'- aCGUACCACGGC-CCUUCu----UCGUa---GGc -5'
21762	5'	-55.4	NC_004813.1	+	12959	1	0.004141
	Target:  5'- uUGCAUGGUGCCGGG-AGAAGCAUCCGu -3' miRNA:   3'- -ACGUACCACGGCCCuUCUUCGUAGGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home