miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21763 5' -50.5 NC_004813.1 + 48752 0.66 0.90119
Target:  5'- --uACcGGUGCGGCAGgc-CCGGCAg -3'
miRNA:   3'- gauUGuCCGCGUUGUCauuGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 34520 0.66 0.90119
Target:  5'- uCUGugGuGGUccgGCAgaGCAGUGGCCAGUGUa -3'
miRNA:   3'- -GAUugU-CCG---CGU--UGUCAUUGGUCGUA- -5'
21763 5' -50.5 NC_004813.1 + 26166 0.66 0.90119
Target:  5'- --cGCAGGCGCuuACG---ACCAGCGg -3'
miRNA:   3'- gauUGUCCGCGu-UGUcauUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 44227 0.67 0.878219
Target:  5'- uUGugGGGCuGCAgguggaugcggaGCAGUuugguGGCCAGCAg -3'
miRNA:   3'- gAUugUCCG-CGU------------UGUCA-----UUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 40883 0.67 0.852714
Target:  5'- -cGGCAGGCagucuuguGCAGCuGauUGACCAGCGg -3'
miRNA:   3'- gaUUGUCCG--------CGUUGuC--AUUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 219 0.68 0.815163
Target:  5'- uUAGCuccaGCGGCaAGUGACCAGCAUg -3'
miRNA:   3'- gAUUGuccgCGUUG-UCAUUGGUCGUA- -5'
21763 5' -50.5 NC_004813.1 + 9816 0.68 0.805213
Target:  5'- aCUAGCuGGCGCAucauuaaaaAUAGUGAagAGCAUg -3'
miRNA:   3'- -GAUUGuCCGCGU---------UGUCAUUggUCGUA- -5'
21763 5' -50.5 NC_004813.1 + 41384 0.69 0.763521
Target:  5'- cCUGAC-GGUGCAggGCGGUGAgCGGUAUu -3'
miRNA:   3'- -GAUUGuCCGCGU--UGUCAUUgGUCGUA- -5'
21763 5' -50.5 NC_004813.1 + 45346 0.7 0.730632
Target:  5'- -gAACAGGCGaCGgcGCAGUGA-CGGCAg -3'
miRNA:   3'- gaUUGUCCGC-GU--UGUCAUUgGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 45637 0.7 0.696757
Target:  5'- cCUGACggucaGGGCGauUAACAGUuauGGCCAGCAg -3'
miRNA:   3'- -GAUUG-----UCCGC--GUUGUCA---UUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 24429 0.73 0.558305
Target:  5'- --uGCAGGCGCAccuGCGGcAAUCAGCGc -3'
miRNA:   3'- gauUGUCCGCGU---UGUCaUUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 40589 0.76 0.398934
Target:  5'- aCUGGCuGGGCGgAGCGGUGGCCAauGCAa -3'
miRNA:   3'- -GAUUG-UCCGCgUUGUCAUUGGU--CGUa -5'
21763 5' -50.5 NC_004813.1 + 12570 0.76 0.389355
Target:  5'- -aGGCAGGCGUGACA---GCCAGCAa -3'
miRNA:   3'- gaUUGUCCGCGUUGUcauUGGUCGUa -5'
21763 5' -50.5 NC_004813.1 + 13408 1.07 0.003476
Target:  5'- gCUAACAGGCGCAACAGUAACCAGCAUa -3'
miRNA:   3'- -GAUUGUCCGCGUUGUCAUUGGUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.