miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21764 5' -51.3 NC_004813.1 + 45435 0.66 0.868195
Target:  5'- uGCAGCAccugacgguggagguGAGCGCAGcuGAcGGCCaGUAUc -3'
miRNA:   3'- gCGUCGU---------------UUCGCGUC--UUaCUGG-CAUA- -5'
21764 5' -51.3 NC_004813.1 + 52734 0.66 0.864841
Target:  5'- aCGCAGUgcccguGCGCAGcgcGAUGACUGg-- -3'
miRNA:   3'- -GCGUCGuuu---CGCGUC---UUACUGGCaua -5'
21764 5' -51.3 NC_004813.1 + 12299 0.66 0.864841
Target:  5'- gGCAGCAAguggGGaacaGCAGAAgaccUGACCGc-- -3'
miRNA:   3'- gCGUCGUU----UCg---CGUCUU----ACUGGCaua -5'
21764 5' -51.3 NC_004813.1 + 16974 0.67 0.847447
Target:  5'- aCGUcuGGCAAAGCGUGGggUGAUUc--- -3'
miRNA:   3'- -GCG--UCGUUUCGCGUCuuACUGGcaua -5'
21764 5' -51.3 NC_004813.1 + 43591 0.67 0.829071
Target:  5'- gGCGGCAAGGCGCAcac--GCCGg-- -3'
miRNA:   3'- gCGUCGUUUCGCGUcuuacUGGCaua -5'
21764 5' -51.3 NC_004813.1 + 24153 0.68 0.809795
Target:  5'- aGCGGCccaucauuuuaGAGGCGCAGGAUGugUu--- -3'
miRNA:   3'- gCGUCG-----------UUUCGCGUCUUACugGcaua -5'
21764 5' -51.3 NC_004813.1 + 24417 0.68 0.787659
Target:  5'- uGCGGCAAucAGCGCcAGAAcggcagccgacaGGCCGUAUu -3'
miRNA:   3'- gCGUCGUU--UCGCG-UCUUa-----------CUGGCAUA- -5'
21764 5' -51.3 NC_004813.1 + 39549 0.68 0.768909
Target:  5'- aGCGGCAGGGacuGguGAAUGuGCCGUu- -3'
miRNA:   3'- gCGUCGUUUCg--CguCUUAC-UGGCAua -5'
21764 5' -51.3 NC_004813.1 + 37996 0.69 0.758272
Target:  5'- cCGaCAGcCGAAGCGCGGAuuu-CCGUAa -3'
miRNA:   3'- -GC-GUC-GUUUCGCGUCUuacuGGCAUa -5'
21764 5' -51.3 NC_004813.1 + 48483 0.69 0.747496
Target:  5'- aGCAGgAuAGCgGCGGAAgaGGCCGUAa -3'
miRNA:   3'- gCGUCgUuUCG-CGUCUUa-CUGGCAUa -5'
21764 5' -51.3 NC_004813.1 + 33793 0.7 0.669224
Target:  5'- uGCAG-AAGGCGguGAAUGACgCGg-- -3'
miRNA:   3'- gCGUCgUUUCGCguCUUACUG-GCaua -5'
21764 5' -51.3 NC_004813.1 + 33631 0.7 0.669224
Target:  5'- uGCAG-AAGGCGguGAAUGACgCGg-- -3'
miRNA:   3'- gCGUCgUUUCGCguCUUACUG-GCaua -5'
21764 5' -51.3 NC_004813.1 + 49117 0.72 0.531613
Target:  5'- uGCAGCGucuGUGCGGuugcggaaagcauGAUGACCGUGa -3'
miRNA:   3'- gCGUCGUuu-CGCGUC-------------UUACUGGCAUa -5'
21764 5' -51.3 NC_004813.1 + 14642 1.07 0.003037
Target:  5'- gCGCAGCAAAGCGCAGAAUGACCGUAUg -3'
miRNA:   3'- -GCGUCGUUUCGCGUCUUACUGGCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.