miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21765 5' -46.4 NC_004813.1 + 48418 0.66 0.994544
Target:  5'- gGgAUGCAAcgaccgcaacaGAAAAAGCCCGGGa--- -3'
miRNA:   3'- aUgUACGUU-----------UUUUUUCGGGCUCaccc -5'
21765 5' -46.4 NC_004813.1 + 39861 0.66 0.993567
Target:  5'- aGCA-GCAGAAAGAgcaacuGGCaCUG-GUGGGg -3'
miRNA:   3'- aUGUaCGUUUUUUU------UCG-GGCuCACCC- -5'
21765 5' -46.4 NC_004813.1 + 41576 0.66 0.992454
Target:  5'- ----gGCGGAGGAuuugcaGAGCCUG-GUGGGu -3'
miRNA:   3'- auguaCGUUUUUU------UUCGGGCuCACCC- -5'
21765 5' -46.4 NC_004813.1 + 32251 0.66 0.992454
Target:  5'- gAUAcGCAGGGAAAcGCgCCGGG-GGGa -3'
miRNA:   3'- aUGUaCGUUUUUUUuCG-GGCUCaCCC- -5'
21765 5' -46.4 NC_004813.1 + 38501 0.68 0.977156
Target:  5'- cACAaagGUGGAAAAcgccuuuauGGCCUGGGUGGGc -3'
miRNA:   3'- aUGUa--CGUUUUUUu--------UCGGGCUCACCC- -5'
21765 5' -46.4 NC_004813.1 + 29634 0.69 0.963965
Target:  5'- gUGCGUugGCAAu-----GCCCGGGUGGa -3'
miRNA:   3'- -AUGUA--CGUUuuuuuuCGGGCUCACCc -5'
21765 5' -46.4 NC_004813.1 + 48799 0.7 0.940989
Target:  5'- cAgGUGCGGcu---GGCCCG-GUGGGg -3'
miRNA:   3'- aUgUACGUUuuuuuUCGGGCuCACCC- -5'
21765 5' -46.4 NC_004813.1 + 13026 0.7 0.940989
Target:  5'- gGCAccUGCAAcAAAcuGCCCGGGUGauGGa -3'
miRNA:   3'- aUGU--ACGUUuUUUuuCGGGCUCAC--CC- -5'
21765 5' -46.4 NC_004813.1 + 43553 0.71 0.887921
Target:  5'- gACAUcaGaCAGGAGAGGGggaCCGAGUGGGu -3'
miRNA:   3'- aUGUA--C-GUUUUUUUUCg--GGCUCACCC- -5'
21765 5' -46.4 NC_004813.1 + 8674 0.71 0.887921
Target:  5'- ----gGCAAAGAAaacccggcgcuGAGgCCGGGUGGGg -3'
miRNA:   3'- auguaCGUUUUUU-----------UUCgGGCUCACCC- -5'
21765 5' -46.4 NC_004813.1 + 20836 1.1 0.006931
Target:  5'- uUACAUGCAAAAAAAAGCCCGAGUGGGu -3'
miRNA:   3'- -AUGUACGUUUUUUUUCGGGCUCACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.