miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21767 3' -56.1 NC_004813.1 + 22601 1.09 0.00069
Target:  5'- uAUCUUCACUGCCACAGGGCGUUGCCCu -3'
miRNA:   3'- -UAGAAGUGACGGUGUCCCGCAACGGG- -5'
21767 3' -56.1 NC_004813.1 + 42994 0.74 0.245862
Target:  5'- uUCUUCACUGCCGgGGcaucgauGGCGUUaugggguucaGCCCu -3'
miRNA:   3'- uAGAAGUGACGGUgUC-------CCGCAA----------CGGG- -5'
21767 3' -56.1 NC_004813.1 + 38265 0.67 0.555595
Target:  5'- aGUCaggCGCUGgCGCAGGGUGUauUGCg- -3'
miRNA:   3'- -UAGaa-GUGACgGUGUCCCGCA--ACGgg -5'
21767 3' -56.1 NC_004813.1 + 38333 0.66 0.654635
Target:  5'- gAUCguacgugCACUGgCUGCGgguauGGGCGUgGCCCg -3'
miRNA:   3'- -UAGaa-----GUGAC-GGUGU-----CCCGCAaCGGG- -5'
21767 3' -56.1 NC_004813.1 + 1639 0.66 0.654635
Target:  5'- aGUCcUCAUUGCaucaACAGGGCucaaGCCUg -3'
miRNA:   3'- -UAGaAGUGACGg---UGUCCCGcaa-CGGG- -5'
21767 3' -56.1 NC_004813.1 + 30113 0.67 0.583966
Target:  5'- ----aCACUGCCccACAGGGCGggaauggucaugcUGCCa -3'
miRNA:   3'- uagaaGUGACGG--UGUCCCGCa------------ACGGg -5'
21767 3' -56.1 NC_004813.1 + 17293 0.68 0.523382
Target:  5'- gGUCUUCAaggucgGCCGCAaGGCGcaaUGCCUc -3'
miRNA:   3'- -UAGAAGUga----CGGUGUcCCGCa--ACGGG- -5'
21767 3' -56.1 NC_004813.1 + 53519 0.68 0.512802
Target:  5'- uUUUUCugcuuCUGCCGgAGGaGUGUgGCCCa -3'
miRNA:   3'- uAGAAGu----GACGGUgUCC-CGCAaCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.