miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21767 5' -56.3 NC_004813.1 + 40595 0.66 0.643582
Target:  5'- uGGGcGGAgcgGUGGCCaaUGCaaaaGGCGGCGUg -3'
miRNA:   3'- cCCC-CCU---UAUUGG--ACGa---CCGUCGCAa -5'
21767 5' -56.3 NC_004813.1 + 40753 0.67 0.577389
Target:  5'- cGGGcGGcGGAUGGCUcGCUGGguGUGc- -3'
miRNA:   3'- -CCC-CC-CUUAUUGGaCGACCguCGCaa -5'
21767 5' -56.3 NC_004813.1 + 29211 0.68 0.523382
Target:  5'- cGGGGGccuGGAUGAUCUGCUGGgAaUGUa -3'
miRNA:   3'- -CCCCC---CUUAUUGGACGACCgUcGCAa -5'
21767 5' -56.3 NC_004813.1 + 22638 1.07 0.000933
Target:  5'- cGGGGGGAAUAACCUGCUGGCAGCGUUc -3'
miRNA:   3'- -CCCCCCUUAUUGGACGACCGUCGCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.