miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21768 3' -54.9 NC_004813.1 + 27713 0.66 0.747545
Target:  5'- cGGAGGUGCUugCGUuuauagcccguaaacAGugcGAGaCGGUGGa -3'
miRNA:   3'- -CCUCUAUGGugGCG---------------UCu--CUC-GCCACU- -5'
21768 3' -54.9 NC_004813.1 + 33622 0.67 0.711737
Target:  5'- cGGA---AgUACUGCAGAaGGCGGUGAa -3'
miRNA:   3'- -CCUcuaUgGUGGCGUCUcUCGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 45261 0.67 0.690226
Target:  5'- --cGGU-CCGgCGCGGGGuguGCGGUGAu -3'
miRNA:   3'- ccuCUAuGGUgGCGUCUCu--CGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 48647 0.67 0.683726
Target:  5'- aGGAGAUACagguccggcagguCCGCAG-GGGCcgaaaGGUGAc -3'
miRNA:   3'- -CCUCUAUGgu-----------GGCGUCuCUCG-----CCACU- -5'
21768 3' -54.9 NC_004813.1 + 33149 0.68 0.657571
Target:  5'- gGGAGA-ACCuGCCGCcccuGGccGGCGGUGAu -3'
miRNA:   3'- -CCUCUaUGG-UGGCG----UCucUCGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 31742 0.68 0.624704
Target:  5'- ---cGUACCGCgGCGGuG-GCGGUGAu -3'
miRNA:   3'- ccucUAUGGUGgCGUCuCuCGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 38830 0.68 0.613748
Target:  5'- cGGAGAUGCagauuGCUGCAGAGgcccgucuGGCGGc-- -3'
miRNA:   3'- -CCUCUAUGg----UGGCGUCUC--------UCGCCacu -5'
21768 3' -54.9 NC_004813.1 + 12308 0.69 0.582098
Target:  5'- uGGGGAacagcagaagaccugACCGCCGCAGAGuGgauguuugacaUGGUGAa -3'
miRNA:   3'- -CCUCUa--------------UGGUGGCGUCUCuC-----------GCCACU- -5'
21768 3' -54.9 NC_004813.1 + 27948 0.71 0.465689
Target:  5'- aGGAGAUAUCACCac---GGGCGGUGGc -3'
miRNA:   3'- -CCUCUAUGGUGGcgucuCUCGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 34575 0.73 0.371156
Target:  5'- cGGuGAUGCUcuACCGCGGuguguucAGAGCcGGUGAa -3'
miRNA:   3'- -CCuCUAUGG--UGGCGUC-------UCUCG-CCACU- -5'
21768 3' -54.9 NC_004813.1 + 27860 0.78 0.173286
Target:  5'- cGGAGAUGCCACCGCcc---GUGGUGAu -3'
miRNA:   3'- -CCUCUAUGGUGGCGucucuCGCCACU- -5'
21768 3' -54.9 NC_004813.1 + 23520 1.11 0.000864
Target:  5'- gGGAGAUACCACCGCAGAGAGCGGUGAa -3'
miRNA:   3'- -CCUCUAUGGUGGCGUCUCUCGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.