miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21768 5' -56 NC_004813.1 + 23557 1.03 0.001845
Target:  5'- gAAUCACCGGUCGCCGAUGCGACUGAAc -3'
miRNA:   3'- -UUAGUGGCCAGCGGCUACGCUGACUU- -5'
21768 5' -56 NC_004813.1 + 14480 0.68 0.494603
Target:  5'- --cCAUCaGUUGCUGcgGCGGCUGAAa -3'
miRNA:   3'- uuaGUGGcCAGCGGCuaCGCUGACUU- -5'
21768 5' -56 NC_004813.1 + 22861 0.66 0.657979
Target:  5'- cAGUCACCGGUCaguGCauuUGCGGCgGAu -3'
miRNA:   3'- -UUAGUGGCCAG---CGgcuACGCUGaCUu -5'
21768 5' -56 NC_004813.1 + 30425 0.66 0.613621
Target:  5'- cGGUUuCCGGUUGCCGGacGCGGCaGAAa -3'
miRNA:   3'- -UUAGuGGCCAGCGGCUa-CGCUGaCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.