miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21770 5' -49.7 NC_004813.1 + 28062 0.66 0.955661
Target:  5'- --gCGGCGAAAAAAGCGGcuaaccguuUUGCggugCCa -3'
miRNA:   3'- uagGCCGCUUUUUUUGCU---------AGCGa---GGc -5'
21770 5' -49.7 NC_004813.1 + 2102 0.66 0.955661
Target:  5'- -gCUGGgGAuaAAGGAAUGuUCGCUCUGa -3'
miRNA:   3'- uaGGCCgCU--UUUUUUGCuAGCGAGGC- -5'
21770 5' -49.7 NC_004813.1 + 5988 0.66 0.951235
Target:  5'- -gCUGGCGAAGAGuggUGAUCaGUUCCu -3'
miRNA:   3'- uaGGCCGCUUUUUuu-GCUAG-CGAGGc -5'
21770 5' -49.7 NC_004813.1 + 45684 0.66 0.946523
Target:  5'- -cCCGGCGGcagaccgcuGAAACGGU-GCUCUGu -3'
miRNA:   3'- uaGGCCGCUuu-------UUUUGCUAgCGAGGC- -5'
21770 5' -49.7 NC_004813.1 + 31788 0.66 0.946036
Target:  5'- cGUCCGGCGGcugagucugauaaGGAGGACGGgaggCGUgugCCu -3'
miRNA:   3'- -UAGGCCGCU-------------UUUUUUGCUa---GCGa--GGc -5'
21770 5' -49.7 NC_004813.1 + 37988 0.69 0.858692
Target:  5'- -gCUGGCGGAuGAAugGA--GCUCCGu -3'
miRNA:   3'- uaGGCCGCUUuUUUugCUagCGAGGC- -5'
21770 5' -49.7 NC_004813.1 + 12229 0.7 0.835562
Target:  5'- uUCUGGCGAAuccucugaccagccaGAAAACGAUCuuUCUGu -3'
miRNA:   3'- uAGGCCGCUU---------------UUUUUGCUAGcgAGGC- -5'
21770 5' -49.7 NC_004813.1 + 26516 0.7 0.822452
Target:  5'- -aCgGGCGAccaugaggGGAGAACGccgCGCUCCGu -3'
miRNA:   3'- uaGgCCGCU--------UUUUUUGCua-GCGAGGC- -5'
21770 5' -49.7 NC_004813.1 + 13054 0.7 0.803001
Target:  5'- aGUCCGGCGAu---AACGGaUGCUUCu -3'
miRNA:   3'- -UAGGCCGCUuuuuUUGCUaGCGAGGc -5'
21770 5' -49.7 NC_004813.1 + 27922 0.74 0.605287
Target:  5'- gAUCCGGUGAAAGcGAugGggCGCUUCu -3'
miRNA:   3'- -UAGGCCGCUUUU-UUugCuaGCGAGGc -5'
21770 5' -49.7 NC_004813.1 + 27312 1.09 0.004337
Target:  5'- cAUCCGGCGAAAAAAACGAUCGCUCCGg -3'
miRNA:   3'- -UAGGCCGCUUUUUUUGCUAGCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.