miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21771 3' -52.8 NC_004813.1 + 2172 0.66 0.841357
Target:  5'- gAGAUACAgGUCUucGCCAUCACCguCa -3'
miRNA:   3'- -UCUGUGUaUAGGccUGGUAGUGGguG- -5'
21771 3' -52.8 NC_004813.1 + 33770 0.66 0.841357
Target:  5'- cGGACGCAcaucAUCCGGggugagacuuuuACCGUCcGCCgGCu -3'
miRNA:   3'- -UCUGUGUa---UAGGCC------------UGGUAG-UGGgUG- -5'
21771 3' -52.8 NC_004813.1 + 33932 0.66 0.841357
Target:  5'- cGGACGCAcaucAUCCGGggugagacuuuuACCGUCcGCCgGCu -3'
miRNA:   3'- -UCUGUGUa---UAGGCC------------UGGUAG-UGGgUG- -5'
21771 3' -52.8 NC_004813.1 + 34093 0.67 0.813694
Target:  5'- cGGACGCAcaucAUCCGGggugagacuuuuGCCGUCcGCCgGCu -3'
miRNA:   3'- -UCUGUGUa---UAGGCC------------UGGUAG-UGGgUG- -5'
21771 3' -52.8 NC_004813.1 + 45003 0.67 0.804065
Target:  5'- ---aGCA-GUCCGGucuUUAUCACCCACa -3'
miRNA:   3'- ucugUGUaUAGGCCu--GGUAGUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 20986 0.67 0.794249
Target:  5'- cAGGCu----UCCGGACUAcaGCCCACu -3'
miRNA:   3'- -UCUGuguauAGGCCUGGUagUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 21347 0.67 0.794249
Target:  5'- gAGACAUAUgaccGUCCGGACCcgCguauuaagcaGCUgGCg -3'
miRNA:   3'- -UCUGUGUA----UAGGCCUGGuaG----------UGGgUG- -5'
21771 3' -52.8 NC_004813.1 + 30002 0.67 0.794249
Target:  5'- uGACGCAaucCCGGu--GUCACCCGCu -3'
miRNA:   3'- uCUGUGUauaGGCCuggUAGUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 50232 0.68 0.742773
Target:  5'- --cCACAacugGUCUGGACguUCugCCACg -3'
miRNA:   3'- ucuGUGUa---UAGGCCUGguAGugGGUG- -5'
21771 3' -52.8 NC_004813.1 + 27270 0.68 0.710401
Target:  5'- cAGACG-AUAUCauCGGACUGUgACCCGCc -3'
miRNA:   3'- -UCUGUgUAUAG--GCCUGGUAgUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 53245 0.69 0.688402
Target:  5'- uGGAC-CGUG-CCGGACgGUCgacggGCCCAUa -3'
miRNA:   3'- -UCUGuGUAUaGGCCUGgUAG-----UGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 34255 0.69 0.655011
Target:  5'- cGGACGCAcaucAUCCGGggugauacuuuuACCGUCugCCGg -3'
miRNA:   3'- -UCUGUGUa---UAGGCC------------UGGUAGugGGUg -5'
21771 3' -52.8 NC_004813.1 + 40434 0.7 0.643823
Target:  5'- uGAgGCGUAaUCGGACgCAUUAUCCACc -3'
miRNA:   3'- uCUgUGUAUaGGCCUG-GUAGUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 47986 0.7 0.643823
Target:  5'- cGuCACAUGcCgGGACCAUCACCg-- -3'
miRNA:   3'- uCuGUGUAUaGgCCUGGUAGUGGgug -5'
21771 3' -52.8 NC_004813.1 + 31630 0.72 0.521096
Target:  5'- cAGAUAaAUAUCCGGggcauucaccagcACCAgcuggUCACCCACg -3'
miRNA:   3'- -UCUGUgUAUAGGCC-------------UGGU-----AGUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 31269 0.73 0.429634
Target:  5'- uGGCAgAUGUcuccCCGGcguCCAUCACCCAUg -3'
miRNA:   3'- uCUGUgUAUA----GGCCu--GGUAGUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 37374 0.73 0.429634
Target:  5'- cGGGCAUGUA-CCGGACCAUagacggccagCACCUGCu -3'
miRNA:   3'- -UCUGUGUAUaGGCCUGGUA----------GUGGGUG- -5'
21771 3' -52.8 NC_004813.1 + 28727 0.75 0.364723
Target:  5'- cGGACAcCGUAUUCGGAUCggCugCCACc -3'
miRNA:   3'- -UCUGU-GUAUAGGCCUGGuaGugGGUG- -5'
21771 3' -52.8 NC_004813.1 + 24435 0.84 0.099852
Target:  5'- uGGuACGgGUAUCUGGACCAUCugCCGCg -3'
miRNA:   3'- -UC-UGUgUAUAGGCCUGGUAGugGGUG- -5'
21771 3' -52.8 NC_004813.1 + 28589 1.11 0.001393
Target:  5'- cAGACACAUAUCCGGACCAUCACCCACa -3'
miRNA:   3'- -UCUGUGUAUAGGCCUGGUAGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.