miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21772 3' -56.4 NC_004813.1 + 17212 0.66 0.643583
Target:  5'- ---aGCGGUCaacaaggcGAGCgGugaauuCCGGCGACa -3'
miRNA:   3'- uuuaCGUCAGa-------CUCGgCu-----GGCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 45551 0.66 0.599366
Target:  5'- ---aGCGGUCagGAcaGCCGuCUGGUGACc -3'
miRNA:   3'- uuuaCGUCAGa-CU--CGGCuGGCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 48662 0.66 0.599366
Target:  5'- ---gGCAgGUCcgcagGGGCCGAaaGGUGACa -3'
miRNA:   3'- uuuaCGU-CAGa----CUCGGCUggCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 41686 0.67 0.577389
Target:  5'- ---aGCAGgagCUGA-CUGACCGGUGGg -3'
miRNA:   3'- uuuaCGUCa--GACUcGGCUGGCCGCUg -5'
21772 3' -56.4 NC_004813.1 + 32095 0.68 0.512802
Target:  5'- ---gGCGGUggCUGAGCCcuuuGCCGGCGcCu -3'
miRNA:   3'- uuuaCGUCA--GACUCGGc---UGGCCGCuG- -5'
21772 3' -56.4 NC_004813.1 + 28906 0.68 0.491913
Target:  5'- --cUGCAguuucuGUCUGAacaccCCGGCUGGCGGCu -3'
miRNA:   3'- uuuACGU------CAGACUc----GGCUGGCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 42231 0.68 0.481616
Target:  5'- --cUGCccuGG-CUGAgcgagGCUGACCGGCGGCu -3'
miRNA:   3'- uuuACG---UCaGACU-----CGGCUGGCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 27738 0.7 0.412744
Target:  5'- ---gGCuGUCUucGCCGAauaaCCGGCGGCa -3'
miRNA:   3'- uuuaCGuCAGAcuCGGCU----GGCCGCUG- -5'
21772 3' -56.4 NC_004813.1 + 31622 1.08 0.000802
Target:  5'- gAAAUGCAGUCUGAGCCGACCGGCGACa -3'
miRNA:   3'- -UUUACGUCAGACUCGGCUGGCCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.