Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21773 | 5' | -53.2 | NC_004813.1 | + | 32580 | 0.66 | 0.801237 |
Target: 5'- ---gGUUGCcGCCGGuguaUGCCGCCg -3' miRNA: 3'- uuuaUAACGaCGGUCuuc-GCGGCGGg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 22534 | 0.66 | 0.79021 |
Target: 5'- ------cGCUGCCgcuuuaagguuucGGGAGCGCUGgCUg -3' miRNA: 3'- uuuauaaCGACGG-------------UCUUCGCGGCgGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 37731 | 0.66 | 0.785127 |
Target: 5'- ---cAUUGCUGCaAGGcucagcgcgucuuccAGCGCCGCa- -3' miRNA: 3'- uuuaUAACGACGgUCU---------------UCGCGGCGgg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 26080 | 0.66 | 0.770673 |
Target: 5'- uGAUGUUGCcGCUGGucguAAGCGCCuGCgCa -3' miRNA: 3'- uUUAUAACGaCGGUC----UUCGCGG-CGgG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 27237 | 0.66 | 0.760165 |
Target: 5'- ------cGCUGCCGGAGGUGuCCGg-- -3' miRNA: 3'- uuuauaaCGACGGUCUUCGC-GGCggg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 47543 | 0.66 | 0.759106 |
Target: 5'- cGAUG-UGCUGaCCGGAAGUgaugacgGUCGCCa -3' miRNA: 3'- uUUAUaACGAC-GGUCUUCG-------CGGCGGg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 51327 | 0.67 | 0.727849 |
Target: 5'- ---gGUUGUUaCCGGAAGaCGCCGCg- -3' miRNA: 3'- uuuaUAACGAcGGUCUUC-GCGGCGgg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 13031 | 0.67 | 0.716856 |
Target: 5'- cGAGUAU---UGCCGGAAGCGagGCCUg -3' miRNA: 3'- -UUUAUAacgACGGUCUUCGCggCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 39230 | 0.68 | 0.694616 |
Target: 5'- ---gGUU-CUGCUcuGucAGCGCCGCCCg -3' miRNA: 3'- uuuaUAAcGACGG--UcuUCGCGGCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 38348 | 0.68 | 0.694616 |
Target: 5'- ------gGCUGCgGGuaugGGCGUgGCCCg -3' miRNA: 3'- uuuauaaCGACGgUCu---UCGCGgCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 53514 | 0.68 | 0.683393 |
Target: 5'- -----cUGCuucUGCCGGAggAGUGUgGCCCa -3' miRNA: 3'- uuuauaACG---ACGGUCU--UCGCGgCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 44446 | 0.68 | 0.649458 |
Target: 5'- --uUAUUGCuguaUGCCGGuuucAGGCuGCCGUCCc -3' miRNA: 3'- uuuAUAACG----ACGGUC----UUCG-CGGCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 37958 | 0.69 | 0.615369 |
Target: 5'- ------aGCUcaGCCAGAgcccGGCGCUGCUCc -3' miRNA: 3'- uuuauaaCGA--CGGUCU----UCGCGGCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 2593 | 0.69 | 0.611963 |
Target: 5'- ---aGUUGCcaguuaauacaccuUGCCaAGAuGCGCCaGCCCa -3' miRNA: 3'- uuuaUAACG--------------ACGG-UCUuCGCGG-CGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 32188 | 0.69 | 0.604023 |
Target: 5'- -----cUGCUGCCA--GGCGCCGgCa -3' miRNA: 3'- uuuauaACGACGGUcuUCGCGGCgGg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 38840 | 0.69 | 0.592703 |
Target: 5'- ---gAUUGCUG-CAGAGGC-CCGUCUg -3' miRNA: 3'- uuuaUAACGACgGUCUUCGcGGCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 45104 | 0.71 | 0.504157 |
Target: 5'- gAGGUGacaCUGCCGGAgaccGGUGCCGCCa -3' miRNA: 3'- -UUUAUaacGACGGUCU----UCGCGGCGGg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 21069 | 0.71 | 0.49346 |
Target: 5'- -----aUGUUGUCAGGgcGGCGUCGCCg -3' miRNA: 3'- uuuauaACGACGGUCU--UCGCGGCGGg -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 24105 | 0.72 | 0.432663 |
Target: 5'- uGGAUGUUGCUGCCGGGuuaugugaaggggauGGUccguugccggaaaaGCgGCCCa -3' miRNA: 3'- -UUUAUAACGACGGUCU---------------UCG--------------CGgCGGG- -5' |
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21773 | 5' | -53.2 | NC_004813.1 | + | 30095 | 0.74 | 0.356801 |
Target: 5'- gGAAUGgucaUGCUGCCAGAgaaacgggAGCGCacugccaaacucCGCCCc -3' miRNA: 3'- -UUUAUa---ACGACGGUCU--------UCGCG------------GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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