miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21773 5' -53.2 NC_004813.1 + 32580 0.66 0.801237
Target:  5'- ---gGUUGCcGCCGGuguaUGCCGCCg -3'
miRNA:   3'- uuuaUAACGaCGGUCuuc-GCGGCGGg -5'
21773 5' -53.2 NC_004813.1 + 22534 0.66 0.79021
Target:  5'- ------cGCUGCCgcuuuaagguuucGGGAGCGCUGgCUg -3'
miRNA:   3'- uuuauaaCGACGG-------------UCUUCGCGGCgGG- -5'
21773 5' -53.2 NC_004813.1 + 37731 0.66 0.785127
Target:  5'- ---cAUUGCUGCaAGGcucagcgcgucuuccAGCGCCGCa- -3'
miRNA:   3'- uuuaUAACGACGgUCU---------------UCGCGGCGgg -5'
21773 5' -53.2 NC_004813.1 + 26080 0.66 0.770673
Target:  5'- uGAUGUUGCcGCUGGucguAAGCGCCuGCgCa -3'
miRNA:   3'- uUUAUAACGaCGGUC----UUCGCGG-CGgG- -5'
21773 5' -53.2 NC_004813.1 + 27237 0.66 0.760165
Target:  5'- ------cGCUGCCGGAGGUGuCCGg-- -3'
miRNA:   3'- uuuauaaCGACGGUCUUCGC-GGCggg -5'
21773 5' -53.2 NC_004813.1 + 47543 0.66 0.759106
Target:  5'- cGAUG-UGCUGaCCGGAAGUgaugacgGUCGCCa -3'
miRNA:   3'- uUUAUaACGAC-GGUCUUCG-------CGGCGGg -5'
21773 5' -53.2 NC_004813.1 + 51327 0.67 0.727849
Target:  5'- ---gGUUGUUaCCGGAAGaCGCCGCg- -3'
miRNA:   3'- uuuaUAACGAcGGUCUUC-GCGGCGgg -5'
21773 5' -53.2 NC_004813.1 + 13031 0.67 0.716856
Target:  5'- cGAGUAU---UGCCGGAAGCGagGCCUg -3'
miRNA:   3'- -UUUAUAacgACGGUCUUCGCggCGGG- -5'
21773 5' -53.2 NC_004813.1 + 39230 0.68 0.694616
Target:  5'- ---gGUU-CUGCUcuGucAGCGCCGCCCg -3'
miRNA:   3'- uuuaUAAcGACGG--UcuUCGCGGCGGG- -5'
21773 5' -53.2 NC_004813.1 + 38348 0.68 0.694616
Target:  5'- ------gGCUGCgGGuaugGGCGUgGCCCg -3'
miRNA:   3'- uuuauaaCGACGgUCu---UCGCGgCGGG- -5'
21773 5' -53.2 NC_004813.1 + 53514 0.68 0.683393
Target:  5'- -----cUGCuucUGCCGGAggAGUGUgGCCCa -3'
miRNA:   3'- uuuauaACG---ACGGUCU--UCGCGgCGGG- -5'
21773 5' -53.2 NC_004813.1 + 44446 0.68 0.649458
Target:  5'- --uUAUUGCuguaUGCCGGuuucAGGCuGCCGUCCc -3'
miRNA:   3'- uuuAUAACG----ACGGUC----UUCG-CGGCGGG- -5'
21773 5' -53.2 NC_004813.1 + 37958 0.69 0.615369
Target:  5'- ------aGCUcaGCCAGAgcccGGCGCUGCUCc -3'
miRNA:   3'- uuuauaaCGA--CGGUCU----UCGCGGCGGG- -5'
21773 5' -53.2 NC_004813.1 + 2593 0.69 0.611963
Target:  5'- ---aGUUGCcaguuaauacaccuUGCCaAGAuGCGCCaGCCCa -3'
miRNA:   3'- uuuaUAACG--------------ACGG-UCUuCGCGG-CGGG- -5'
21773 5' -53.2 NC_004813.1 + 32188 0.69 0.604023
Target:  5'- -----cUGCUGCCA--GGCGCCGgCa -3'
miRNA:   3'- uuuauaACGACGGUcuUCGCGGCgGg -5'
21773 5' -53.2 NC_004813.1 + 38840 0.69 0.592703
Target:  5'- ---gAUUGCUG-CAGAGGC-CCGUCUg -3'
miRNA:   3'- uuuaUAACGACgGUCUUCGcGGCGGG- -5'
21773 5' -53.2 NC_004813.1 + 45104 0.71 0.504157
Target:  5'- gAGGUGacaCUGCCGGAgaccGGUGCCGCCa -3'
miRNA:   3'- -UUUAUaacGACGGUCU----UCGCGGCGGg -5'
21773 5' -53.2 NC_004813.1 + 21069 0.71 0.49346
Target:  5'- -----aUGUUGUCAGGgcGGCGUCGCCg -3'
miRNA:   3'- uuuauaACGACGGUCU--UCGCGGCGGg -5'
21773 5' -53.2 NC_004813.1 + 24105 0.72 0.432663
Target:  5'- uGGAUGUUGCUGCCGGGuuaugugaaggggauGGUccguugccggaaaaGCgGCCCa -3'
miRNA:   3'- -UUUAUAACGACGGUCU---------------UCG--------------CGgCGGG- -5'
21773 5' -53.2 NC_004813.1 + 30095 0.74 0.356801
Target:  5'- gGAAUGgucaUGCUGCCAGAgaaacgggAGCGCacugccaaacucCGCCCc -3'
miRNA:   3'- -UUUAUa---ACGACGGUCU--------UCGCG------------GCGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.