Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 43070 | 1.1 | 0.00295 |
Target: 5'- uGUUUUCACUGGGUGCCAGCAUGAUACu -3' miRNA: 3'- -CAAAAGUGACCCACGGUCGUACUAUG- -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 39000 | 0.71 | 0.717263 |
Target: 5'- -----uGCUGGGgGCugCAGCAUGGUACa -3' miRNA: 3'- caaaagUGACCCaCG--GUCGUACUAUG- -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 49597 | 0.7 | 0.761675 |
Target: 5'- ---gUguCUGGGUucGCCAGCAUGAg-- -3' miRNA: 3'- caaaAguGACCCA--CGGUCGUACUaug -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 52434 | 0.7 | 0.761675 |
Target: 5'- ---gUguCUGGGUucGCCAGCAUGAg-- -3' miRNA: 3'- caaaAguGACCCA--CGGUCGUACUaug -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 31525 | 0.68 | 0.860459 |
Target: 5'- ----gUACgUGGGUGaCCAGC-UGGUGCu -3' miRNA: 3'- caaaaGUG-ACCCAC-GGUCGuACUAUG- -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 40767 | 0.67 | 0.900525 |
Target: 5'- ---cUCGCUGGGUGUgcgcgcggugggUAGUAUGAacgGCa -3' miRNA: 3'- caaaAGUGACCCACG------------GUCGUACUa--UG- -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 14688 | 0.66 | 0.948924 |
Target: 5'- -gUUUCGCgucaGGUGCUauGGCAUGGUcaACg -3' miRNA: 3'- caAAAGUGac--CCACGG--UCGUACUA--UG- -5' |
|||||||
21774 | 3' | -49.3 | NC_004813.1 | + | 41881 | 0.69 | 0.823554 |
Target: 5'- ----aUACaGGuGUucGCCAGCAUGAUGCg -3' miRNA: 3'- caaaaGUGaCC-CA--CGGUCGUACUAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home