miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21774 3' -49.3 NC_004813.1 + 43070 1.1 0.00295
Target:  5'- uGUUUUCACUGGGUGCCAGCAUGAUACu -3'
miRNA:   3'- -CAAAAGUGACCCACGGUCGUACUAUG- -5'
21774 3' -49.3 NC_004813.1 + 39000 0.71 0.717263
Target:  5'- -----uGCUGGGgGCugCAGCAUGGUACa -3'
miRNA:   3'- caaaagUGACCCaCG--GUCGUACUAUG- -5'
21774 3' -49.3 NC_004813.1 + 49597 0.7 0.761675
Target:  5'- ---gUguCUGGGUucGCCAGCAUGAg-- -3'
miRNA:   3'- caaaAguGACCCA--CGGUCGUACUaug -5'
21774 3' -49.3 NC_004813.1 + 52434 0.7 0.761675
Target:  5'- ---gUguCUGGGUucGCCAGCAUGAg-- -3'
miRNA:   3'- caaaAguGACCCA--CGGUCGUACUaug -5'
21774 3' -49.3 NC_004813.1 + 31525 0.68 0.860459
Target:  5'- ----gUACgUGGGUGaCCAGC-UGGUGCu -3'
miRNA:   3'- caaaaGUG-ACCCAC-GGUCGuACUAUG- -5'
21774 3' -49.3 NC_004813.1 + 40767 0.67 0.900525
Target:  5'- ---cUCGCUGGGUGUgcgcgcggugggUAGUAUGAacgGCa -3'
miRNA:   3'- caaaAGUGACCCACG------------GUCGUACUa--UG- -5'
21774 3' -49.3 NC_004813.1 + 14688 0.66 0.948924
Target:  5'- -gUUUCGCgucaGGUGCUauGGCAUGGUcaACg -3'
miRNA:   3'- caAAAGUGac--CCACGG--UCGUACUA--UG- -5'
21774 3' -49.3 NC_004813.1 + 41881 0.69 0.823554
Target:  5'- ----aUACaGGuGUucGCCAGCAUGAUGCg -3'
miRNA:   3'- caaaaGUGaCC-CA--CGGUCGUACUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.