Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21775 | 3' | -57.1 | NC_004813.1 | + | 13244 | 0.71 | 0.33322 |
Target: 5'- uCCUGUc-AugGGC-GGCAGACCUCUa -3' miRNA: 3'- uGGGCGuaUugCCGaCCGUCUGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 13657 | 0.67 | 0.55053 |
Target: 5'- uACCCGUuucAUcGCGGCacucUGGC-GACaCUCCu -3' miRNA: 3'- -UGGGCG---UAuUGCCG----ACCGuCUG-GAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 21365 | 0.7 | 0.401526 |
Target: 5'- gACCCGCGUAuuaaGCaGCUGGCGcGCCg-- -3' miRNA: 3'- -UGGGCGUAU----UGcCGACCGUcUGGagg -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 29262 | 0.72 | 0.309897 |
Target: 5'- aACCCGCG-AAUGGCUGGgCugGGGCCaugCCu -3' miRNA: 3'- -UGGGCGUaUUGCCGACC-G--UCUGGa--GG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 30359 | 0.72 | 0.309897 |
Target: 5'- uUCCGCAUucgcgggcACGGUgacGGCAGAcaCCUCCa -3' miRNA: 3'- uGGGCGUAu-------UGCCGa--CCGUCU--GGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 30474 | 0.69 | 0.448496 |
Target: 5'- aACaaGCGUGcaGC-GCUGGCAG-CCUCCc -3' miRNA: 3'- -UGggCGUAU--UGcCGACCGUCuGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 30606 | 0.67 | 0.561181 |
Target: 5'- cAUCCaGCGUGcgcccuuccucuGCGGCuuUGGUcauGACCUCCu -3' miRNA: 3'- -UGGG-CGUAU------------UGCCG--ACCGu--CUGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 30885 | 0.66 | 0.604263 |
Target: 5'- gAUCCGCA-GugGGCaGGCAG-CCUg- -3' miRNA: 3'- -UGGGCGUaUugCCGaCCGUCuGGAgg -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 31250 | 0.72 | 0.309897 |
Target: 5'- gACCCGaaaAaAGCGGCggUGGCAGAugUCUCCc -3' miRNA: 3'- -UGGGCg--UaUUGCCG--ACCGUCU--GGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 31376 | 0.71 | 0.34947 |
Target: 5'- aACCUGCAgcccaccgguGCGGuCUGGCuGAUgUCCa -3' miRNA: 3'- -UGGGCGUau--------UGCC-GACCGuCUGgAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 31466 | 0.68 | 0.478094 |
Target: 5'- uACCCGgaCAUGACccuGCUGGguGGCUccuUCCa -3' miRNA: 3'- -UGGGC--GUAUUGc--CGACCguCUGG---AGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 31902 | 0.69 | 0.458251 |
Target: 5'- aACCUGUu--ACGGgaGGCAcacGCCUCCc -3' miRNA: 3'- -UGGGCGuauUGCCgaCCGUc--UGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 35931 | 0.67 | 0.570814 |
Target: 5'- uACCCGUAUGugGucccccuGCuggaUGGCAGGCCgUCg -3' miRNA: 3'- -UGGGCGUAUugC-------CG----ACCGUCUGG-AGg -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 40815 | 0.72 | 0.309897 |
Target: 5'- cGCCCGCGUcagaggcauAAUGGCUucaGGUccGGCCUCCc -3' miRNA: 3'- -UGGGCGUA---------UUGCCGA---CCGu-CUGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 41694 | 0.7 | 0.366277 |
Target: 5'- aACgCGCAUAcaccCGGC-GGCGGACCaCCg -3' miRNA: 3'- -UGgGCGUAUu---GCCGaCCGUCUGGaGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 44790 | 1.12 | 0.000415 |
Target: 5'- gACCCGCAUAACGGCUGGCAGACCUCCa -3' miRNA: 3'- -UGGGCGUAUUGCCGACCGUCUGGAGG- -5' |
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21775 | 3' | -57.1 | NC_004813.1 | + | 46085 | 0.66 | 0.593436 |
Target: 5'- aGCuuGCGgaugaGAUGGC-GGagaugaAGACCUCCa -3' miRNA: 3'- -UGggCGUa----UUGCCGaCCg-----UCUGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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