miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21775 5' -54.6 NC_004813.1 + 39480 0.66 0.774067
Target:  5'- cGGucuuccaGCCCGGcAAGCaCAUccugaauggACUGCGCu -3'
miRNA:   3'- aCCuuc----UGGGCC-UUCG-GUA---------UGACGCG- -5'
21775 5' -54.6 NC_004813.1 + 20765 0.66 0.753583
Target:  5'- gGGAGGcACCCGGca-UCAUGCUGUa- -3'
miRNA:   3'- aCCUUC-UGGGCCuucGGUAUGACGcg -5'
21775 5' -54.6 NC_004813.1 + 39039 0.66 0.743148
Target:  5'- aGGAgcAGGCCaGGGAGUC-UGC-GCGCc -3'
miRNA:   3'- aCCU--UCUGGgCCUUCGGuAUGaCGCG- -5'
21775 5' -54.6 NC_004813.1 + 30144 0.66 0.7326
Target:  5'- cUGGAugAGGCCUGGGcGGCCAUuaagACcGgGCu -3'
miRNA:   3'- -ACCU--UCUGGGCCU-UCGGUA----UGaCgCG- -5'
21775 5' -54.6 NC_004813.1 + 30678 0.67 0.71121
Target:  5'- gGGAAuguGGCCgCGGuGGCUu--CUGCGCc -3'
miRNA:   3'- aCCUU---CUGG-GCCuUCGGuauGACGCG- -5'
21775 5' -54.6 NC_004813.1 + 27243 0.67 0.700392
Target:  5'- cGGAGGuguCCGGAGGUCAUgGCaGgGCa -3'
miRNA:   3'- aCCUUCug-GGCCUUCGGUA-UGaCgCG- -5'
21775 5' -54.6 NC_004813.1 + 48237 0.67 0.689506
Target:  5'- gGGGAGGCaUCGGAgucAGCCcgGCagGCGg -3'
miRNA:   3'- aCCUUCUG-GGCCU---UCGGuaUGa-CGCg -5'
21775 5' -54.6 NC_004813.1 + 46165 0.67 0.689506
Target:  5'- cUGGAGGACCa-GAGcGCCAccauacagcagaUACaGCGCg -3'
miRNA:   3'- -ACCUUCUGGgcCUU-CGGU------------AUGaCGCG- -5'
21775 5' -54.6 NC_004813.1 + 28731 0.67 0.678565
Target:  5'- cGGAAGACauguuaCGuGAAGCCAU-CgGCGg -3'
miRNA:   3'- aCCUUCUGg-----GC-CUUCGGUAuGaCGCg -5'
21775 5' -54.6 NC_004813.1 + 27565 0.68 0.623408
Target:  5'- ---uGGACCCGGGaggaGGCUGUGCUGacaaCGCa -3'
miRNA:   3'- accuUCUGGGCCU----UCGGUAUGAC----GCG- -5'
21775 5' -54.6 NC_004813.1 + 40717 0.7 0.514739
Target:  5'- gGGGAGGCCgGaccuGAAGCCAUuaugccuCUGaCGCg -3'
miRNA:   3'- aCCUUCUGGgC----CUUCGGUAu------GAC-GCG- -5'
21775 5' -54.6 NC_004813.1 + 36106 0.71 0.473318
Target:  5'- aGGAc-GCCCGuGAAGCCAUaauGCUGCu- -3'
miRNA:   3'- aCCUucUGGGC-CUUCGGUA---UGACGcg -5'
21775 5' -54.6 NC_004813.1 + 29257 0.72 0.421167
Target:  5'- aGGGAaACCCGcgaauggcugggcuGggGCCAUGCcuggGCGCa -3'
miRNA:   3'- aCCUUcUGGGC--------------CuuCGGUAUGa---CGCG- -5'
21775 5' -54.6 NC_004813.1 + 38752 0.74 0.303857
Target:  5'- gUGGcAGACaucgcuCCGGAGGCCAUAUUGC-Ca -3'
miRNA:   3'- -ACCuUCUG------GGCCUUCGGUAUGACGcG- -5'
21775 5' -54.6 NC_004813.1 + 44826 1.12 0.000764
Target:  5'- gUGGAAGACCCGGAAGCCAUACUGCGCu -3'
miRNA:   3'- -ACCUUCUGGGCCUUCGGUAUGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.