Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21775 | 5' | -54.6 | NC_004813.1 | + | 39480 | 0.66 | 0.774067 |
Target: 5'- cGGucuuccaGCCCGGcAAGCaCAUccugaauggACUGCGCu -3' miRNA: 3'- aCCuuc----UGGGCC-UUCG-GUA---------UGACGCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 20765 | 0.66 | 0.753583 |
Target: 5'- gGGAGGcACCCGGca-UCAUGCUGUa- -3' miRNA: 3'- aCCUUC-UGGGCCuucGGUAUGACGcg -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 39039 | 0.66 | 0.743148 |
Target: 5'- aGGAgcAGGCCaGGGAGUC-UGC-GCGCc -3' miRNA: 3'- aCCU--UCUGGgCCUUCGGuAUGaCGCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 30144 | 0.66 | 0.7326 |
Target: 5'- cUGGAugAGGCCUGGGcGGCCAUuaagACcGgGCu -3' miRNA: 3'- -ACCU--UCUGGGCCU-UCGGUA----UGaCgCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 30678 | 0.67 | 0.71121 |
Target: 5'- gGGAAuguGGCCgCGGuGGCUu--CUGCGCc -3' miRNA: 3'- aCCUU---CUGG-GCCuUCGGuauGACGCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 27243 | 0.67 | 0.700392 |
Target: 5'- cGGAGGuguCCGGAGGUCAUgGCaGgGCa -3' miRNA: 3'- aCCUUCug-GGCCUUCGGUA-UGaCgCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 48237 | 0.67 | 0.689506 |
Target: 5'- gGGGAGGCaUCGGAgucAGCCcgGCagGCGg -3' miRNA: 3'- aCCUUCUG-GGCCU---UCGGuaUGa-CGCg -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 46165 | 0.67 | 0.689506 |
Target: 5'- cUGGAGGACCa-GAGcGCCAccauacagcagaUACaGCGCg -3' miRNA: 3'- -ACCUUCUGGgcCUU-CGGU------------AUGaCGCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 28731 | 0.67 | 0.678565 |
Target: 5'- cGGAAGACauguuaCGuGAAGCCAU-CgGCGg -3' miRNA: 3'- aCCUUCUGg-----GC-CUUCGGUAuGaCGCg -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 27565 | 0.68 | 0.623408 |
Target: 5'- ---uGGACCCGGGaggaGGCUGUGCUGacaaCGCa -3' miRNA: 3'- accuUCUGGGCCU----UCGGUAUGAC----GCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 40717 | 0.7 | 0.514739 |
Target: 5'- gGGGAGGCCgGaccuGAAGCCAUuaugccuCUGaCGCg -3' miRNA: 3'- aCCUUCUGGgC----CUUCGGUAu------GAC-GCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 36106 | 0.71 | 0.473318 |
Target: 5'- aGGAc-GCCCGuGAAGCCAUaauGCUGCu- -3' miRNA: 3'- aCCUucUGGGC-CUUCGGUA---UGACGcg -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 29257 | 0.72 | 0.421167 |
Target: 5'- aGGGAaACCCGcgaauggcugggcuGggGCCAUGCcuggGCGCa -3' miRNA: 3'- aCCUUcUGGGC--------------CuuCGGUAUGa---CGCG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 38752 | 0.74 | 0.303857 |
Target: 5'- gUGGcAGACaucgcuCCGGAGGCCAUAUUGC-Ca -3' miRNA: 3'- -ACCuUCUG------GGCCUUCGGUAUGACGcG- -5' |
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21775 | 5' | -54.6 | NC_004813.1 | + | 44826 | 1.12 | 0.000764 |
Target: 5'- gUGGAAGACCCGGAAGCCAUACUGCGCu -3' miRNA: 3'- -ACCUUCUGGGCCUUCGGUAUGACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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