miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21776 3' -63.3 NC_004813.1 + 43202 0.66 0.324435
Target:  5'- uUGCCcaGGGGaacccgauGCCGGUGCC-UUACGGUg -3'
miRNA:   3'- gACGG--CCUC--------UGGCCACGGcGGUGCCA- -5'
21776 3' -63.3 NC_004813.1 + 38621 0.66 0.363464
Target:  5'- -aGCCGuGGGcgcGCUGGuUGCCGUCGgGGUu -3'
miRNA:   3'- gaCGGC-CUC---UGGCC-ACGGCGGUgCCA- -5'
21776 3' -63.3 NC_004813.1 + 31853 0.67 0.29552
Target:  5'- -cGCCGGAcgcacugccauaGuucacuCCGGUGaucaccgccaCCGCCGCGGUa -3'
miRNA:   3'- gaCGGCCU------------Cu-----GGCCAC----------GGCGGUGCCA- -5'
21776 3' -63.3 NC_004813.1 + 42278 0.67 0.275177
Target:  5'- aCUGCCcuGGuGGCUGGU-CUGCCGgGGUg -3'
miRNA:   3'- -GACGG--CCuCUGGCCAcGGCGGUgCCA- -5'
21776 3' -63.3 NC_004813.1 + 21340 0.67 0.309721
Target:  5'- gCUGCCGGAGACauaUGaCCGUC-CGGa -3'
miRNA:   3'- -GACGGCCUCUGgccAC-GGCGGuGCCa -5'
21776 3' -63.3 NC_004813.1 + 48690 0.68 0.26865
Target:  5'- -cGCCGGuugccccgacaGGGCCGGUGUCaCCACGc- -3'
miRNA:   3'- gaCGGCC-----------UCUGGCCACGGcGGUGCca -5'
21776 3' -63.3 NC_004813.1 + 26219 0.69 0.204902
Target:  5'- -cGCCGGAGguGCCGGUGgcuucaCGC-ACGGUa -3'
miRNA:   3'- gaCGGCCUC--UGGCCACg-----GCGgUGCCA- -5'
21776 3' -63.3 NC_004813.1 + 32758 0.7 0.189947
Target:  5'- aCUGCCGGGGAucucaaucaccCCGGacggccUGCCGCCAUu-- -3'
miRNA:   3'- -GACGGCCUCU-----------GGCC------ACGGCGGUGcca -5'
21776 3' -63.3 NC_004813.1 + 30655 0.71 0.162898
Target:  5'- -aGCCGGugaaacAGGCCGGUaacgggaauGUgGCCGCGGUg -3'
miRNA:   3'- gaCGGCC------UCUGGCCA---------CGgCGGUGCCA- -5'
21776 3' -63.3 NC_004813.1 + 37932 0.72 0.14456
Target:  5'- gCUGUCGGAauGACCGGUGCguuugccggugccuuUGCCACcGGa -3'
miRNA:   3'- -GACGGCCU--CUGGCCACG---------------GCGGUG-CCa -5'
21776 3' -63.3 NC_004813.1 + 30617 0.72 0.12545
Target:  5'- cCUGCgugaacUGGAaGCCGGUaagGCCGCCACGGc -3'
miRNA:   3'- -GACG------GCCUcUGGCCA---CGGCGGUGCCa -5'
21776 3' -63.3 NC_004813.1 + 45112 1.07 0.00026
Target:  5'- aCUGCCGGAGACCGGUGCCGCCACGGUg -3'
miRNA:   3'- -GACGGCCUCUGGCCACGGCGGUGCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.