Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21776 | 3' | -63.3 | NC_004813.1 | + | 43202 | 0.66 | 0.324435 |
Target: 5'- uUGCCcaGGGGaacccgauGCCGGUGCC-UUACGGUg -3' miRNA: 3'- gACGG--CCUC--------UGGCCACGGcGGUGCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 38621 | 0.66 | 0.363464 |
Target: 5'- -aGCCGuGGGcgcGCUGGuUGCCGUCGgGGUu -3' miRNA: 3'- gaCGGC-CUC---UGGCC-ACGGCGGUgCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 31853 | 0.67 | 0.29552 |
Target: 5'- -cGCCGGAcgcacugccauaGuucacuCCGGUGaucaccgccaCCGCCGCGGUa -3' miRNA: 3'- gaCGGCCU------------Cu-----GGCCAC----------GGCGGUGCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 42278 | 0.67 | 0.275177 |
Target: 5'- aCUGCCcuGGuGGCUGGU-CUGCCGgGGUg -3' miRNA: 3'- -GACGG--CCuCUGGCCAcGGCGGUgCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 21340 | 0.67 | 0.309721 |
Target: 5'- gCUGCCGGAGACauaUGaCCGUC-CGGa -3' miRNA: 3'- -GACGGCCUCUGgccAC-GGCGGuGCCa -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 48690 | 0.68 | 0.26865 |
Target: 5'- -cGCCGGuugccccgacaGGGCCGGUGUCaCCACGc- -3' miRNA: 3'- gaCGGCC-----------UCUGGCCACGGcGGUGCca -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 26219 | 0.69 | 0.204902 |
Target: 5'- -cGCCGGAGguGCCGGUGgcuucaCGC-ACGGUa -3' miRNA: 3'- gaCGGCCUC--UGGCCACg-----GCGgUGCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 32758 | 0.7 | 0.189947 |
Target: 5'- aCUGCCGGGGAucucaaucaccCCGGacggccUGCCGCCAUu-- -3' miRNA: 3'- -GACGGCCUCU-----------GGCC------ACGGCGGUGcca -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 30655 | 0.71 | 0.162898 |
Target: 5'- -aGCCGGugaaacAGGCCGGUaacgggaauGUgGCCGCGGUg -3' miRNA: 3'- gaCGGCC------UCUGGCCA---------CGgCGGUGCCA- -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 37932 | 0.72 | 0.14456 |
Target: 5'- gCUGUCGGAauGACCGGUGCguuugccggugccuuUGCCACcGGa -3' miRNA: 3'- -GACGGCCU--CUGGCCACG---------------GCGGUG-CCa -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 30617 | 0.72 | 0.12545 |
Target: 5'- cCUGCgugaacUGGAaGCCGGUaagGCCGCCACGGc -3' miRNA: 3'- -GACG------GCCUcUGGCCA---CGGCGGUGCCa -5' |
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21776 | 3' | -63.3 | NC_004813.1 | + | 45112 | 1.07 | 0.00026 |
Target: 5'- aCUGCCGGAGACCGGUGCCGCCACGGUg -3' miRNA: 3'- -GACGGCCUCUGGCCACGGCGGUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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