Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21777 | 3' | -55.2 | NC_004813.1 | + | 46635 | 0.66 | 0.74853 |
Target: 5'- -aGGCGaccuGGUGAAgacgGUGGGGaaaGCCu -3' miRNA: 3'- gaCCGCgu--CCACUU----UACCCUgugCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 8687 | 0.66 | 0.741245 |
Target: 5'- -cGGCGCugaggccGGGUGGggaauuucacuuAuuacuguucguuuccAUGGGAUugGCCa -3' miRNA: 3'- gaCCGCG-------UCCACU------------U---------------UACCCUGugCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 44066 | 0.66 | 0.727576 |
Target: 5'- uCUGGCGUcGGUGAuucuGGAUAaucUGCCu -3' miRNA: 3'- -GACCGCGuCCACUuuacCCUGU---GCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 46563 | 0.66 | 0.727576 |
Target: 5'- -cGGCGuCAGG-GAAAacgucgGGGGguUGCCg -3' miRNA: 3'- gaCCGC-GUCCaCUUUa-----CCCUguGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 38979 | 0.66 | 0.724398 |
Target: 5'- gUGGCGUAcccggacuGGUGAugcUGGGggcugcagcaugguACACGCUg -3' miRNA: 3'- gACCGCGU--------CCACUuu-ACCC--------------UGUGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 29915 | 0.67 | 0.673728 |
Target: 5'- -aGGaugaGCGGGUGAucaccGGGAUucgucaACGCCu -3' miRNA: 3'- gaCCg---CGUCCACUuua--CCCUG------UGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 32242 | 0.67 | 0.673728 |
Target: 5'- --uGCGCAGG-GGAuacgcaGGGAaaCGCGCCg -3' miRNA: 3'- gacCGCGUCCaCUUua----CCCU--GUGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 45256 | 0.67 | 0.673728 |
Target: 5'- -cGGCGCGGGgu--GUGcGGugAUGUCc -3' miRNA: 3'- gaCCGCGUCCacuuUAC-CCugUGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 25193 | 0.67 | 0.662797 |
Target: 5'- -cGuuGCGGG---GAUGGGGCugGCCu -3' miRNA: 3'- gaCcgCGUCCacuUUACCCUGugCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 54292 | 0.68 | 0.629874 |
Target: 5'- aUGGUggGCAGGUacGAcucUGGGGCugGCa -3' miRNA: 3'- gACCG--CGUCCAcuUU---ACCCUGugCGg -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 4899 | 0.7 | 0.468079 |
Target: 5'- aUGGCcCAGGUGcaguacagcauGUGGGugACGCg -3' miRNA: 3'- gACCGcGUCCACuu---------UACCCugUGCGg -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 35253 | 0.71 | 0.460093 |
Target: 5'- aUGGCGCAGGcgGAAAuccgcaucUGGGuGCGCGgUCa -3' miRNA: 3'- gACCGCGUCCa-CUUU--------ACCC-UGUGC-GG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 44392 | 0.72 | 0.402646 |
Target: 5'- -cGGC-CuGGUGccuGUGGGACAUGCUg -3' miRNA: 3'- gaCCGcGuCCACuu-UACCCUGUGCGG- -5' |
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21777 | 3' | -55.2 | NC_004813.1 | + | 45478 | 1.12 | 0.000622 |
Target: 5'- uCUGGCGCAGGUGAAAUGGGACACGCCg -3' miRNA: 3'- -GACCGCGUCCACUUUACCCUGUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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